RNA id: TU555342


Basic Information

Item Value
RNA id TU555342
length 541
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G488574
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24744862 ~ 24788105 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccaggaccttgaaatgcttcttacgaagccactccttcgttgcccgggcggtgtgtttgggatcattgtcatgctgaaagacatgtttcatcttcaatgcccttgctgatggaaggaggttttcactcaaaatctcacgatacatggccccattctttcctttacacggatcagtcgtcctggtccctttgcagaaaaacagccccaaagcatgatgtttccacccccatgcttcacagtaggtatggtgttctttggatgcaactcagcattctttgtcctccaaacacgacgagtttagtttttaccaaaaagttatattttgttttcatctgaccatatgacattctcccaatcttcttctggatcatccaaatgctctctagcaaacttcagacgggcctggacatgtactggcttaagcagggggacacgtctggcactgcaggatttgagtccctggcggcgtagtgtgttactgatggtaggctttgttactttggtcccagctctctgtaggtcattcactaggtcccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU555287 lncRNA downstream 29811 24714447 ~ 24715051 (-) True LOC110525585
TU555303 lncRNA downstream 44104 24700369 ~ 24700758 (-) True G488535
TU555311 lncRNA downstream 58576 24686086 ~ 24686286 (-) True G488543
TU555301 lncRNA downstream 69275 24675321 ~ 24675587 (-) True G488533
TU555276 lncRNA downstream 100645 24643709 ~ 24644217 (-) True G488508
TU555387 lncRNA upstream 11411 24799516 ~ 24800711 (-) True G488618
TU555390 lncRNA upstream 15461 24803566 ~ 24804010 (-) True G488620
TU555417 lncRNA upstream 49491 24837596 ~ 24839086 (-) True G488645
TU555421 lncRNA upstream 51894 24839999 ~ 24842967 (-) True G488646
TU555478 lncRNA upstream 119119 24907224 ~ 24907442 (-) True G488693
XM_036979705.1 mRNA downstream 29772 24655788 ~ 24715090 (-) False LOC110525585
XM_036979706.1 mRNA downstream 29772 24655788 ~ 24715090 (-) False LOC110525585
XM_036979708.1 mRNA downstream 29773 24655788 ~ 24715089 (-) False LOC110525585
XM_036979707.1 mRNA downstream 29774 24655788 ~ 24715088 (-) False LOC110525585
XM_036979699.1 mRNA downstream 110504 24597970 ~ 24634358 (-) False ep400
XM_021605835.2 mRNA upstream 85118 24873223 ~ 24885005 (-) False piwil1
XM_021605836.2 mRNA upstream 85118 24873223 ~ 24885005 (-) True piwil1
XM_021605837.2 mRNA upstream 123522 24911627 ~ 24917852 (-) True LOC110525589
XM_021605839.2 mRNA upstream 384756 25172861 ~ 25375480 (-) False LOC110525591
XM_036979719.1 mRNA upstream 384756 25172861 ~ 25375482 (-) False LOC110525591
TU555288 other downstream 35442 24706571 ~ 24709420 (-) False LOC110525585
TU555289 other downstream 69961 24660897 ~ 24674901 (-) False LOC110525585
TU555138 other downstream 391039 24353533 ~ 24353823 (-) True G488386
TU554111 other downstream 1027079 23713875 ~ 23717783 (-) True LOC110525552
TU554039 other downstream 1159308 23583036 ~ 23585554 (-) True LOC110525180
TU555826 other upstream 318100 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 708858 25496963 ~ 25497489 (-) True G489511
TU557298 other upstream 1491602 26279707 ~ 26283169 (-) True LOC110525606
TU557449 other upstream 1667627 26455732 ~ 26457841 (-) True tmem230b
TU557799 other upstream 1759117 26547222 ~ 26551627 (-) True LOC110525619

Expression Profile