RNA id: TU555417


Basic Information

Item Value
RNA id TU555417
length 1276
lncRNA type intronic
GC content 0.37
exon number 2
gene id G488645
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24837596 ~ 24839086 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaataaaggtgtacatttttattttttttatctgccaaatcggtgtccaaaaacacTGATTTCCGATtgctatgaaaacttgaaatcggccctaattaatcgtccattccgattaatcagtcaaCCTCTAGTAAGTAGTATAAACAACTCTCATAGTGACGAGCAGTAAGTGACATTAACAACAACTCTCACAGTGACGAGTAGTAAGTAGTATAAACAACAACTCTCACAGTGACAAGCAGTAAGTAGTATAAACAACAACTCTCACAGTGACGAGTAGTAAGTAGTATAAACAACAACTCTCACATTGACGAGCAATAACTAGTATTAACAACAACTTTCACAGTGACGAGCAGTAAGTAGTATTAACAACACACAGGGAAGAGCAATAACTAGCATTAACAACAACTTTCACAGTGACGAGCAGTAAGTAGTATTAACAACACACAGTGAAGAGCAGTAACTAGTATTAACAACACATAGTGAAGAGCAGTAAGTAGTATTAACAACAACTTTCACAGTGACGAGCAGTAAGTAGTATTAACAACAACTTTCACAGTGACGCGCAGTAAGTAGTATTAACAACAACACTCACAGTGACGAGCAATAAGTAGTATTAACAACAACACTCACAGTGACGAGCAGTAAGTAATATTAACAACAACTTTCACAGTGACGAGCAGTAAGTAGTATTAACAACAACACTCACAGTGACGAGCAGTAAGTAGTATTAACAACTCTCACATGGATGAGCAGTAAGTAGTATTAACAACACACAGTGAAGAGCAGTAAGTAGTATTAACAACACATAGTGAAGAGCAGTAAGTAGTATTAACAACAACTTTCACATGGATGAGCAGTAAGTAGTATTAACAACTCTCACAGTGACGAGCAGTAAGTAGTATTAACAACTCTCACAGTGACGAGTAGTAAGTAGTATAAACAACAACTCTCACAGTGACGAGTAGTAAGTAGTATAAACAACAACTCTCACAGTGACGAGCAGTAGGTAGTATTAACAACTCTCACAGTGACGAGTAGTAAGTAGTATAAACAACAACTCTCACAGTGACGAGTAGTAAGTAGTATAAACAACAACTCTCACAGTGACGAGCAGTAAGTAGTATAAACAACAACTCTCACAGTGACGAGCAGTAAGTAGTATAAACAACAACTCTCACAGTGACGAGCAGTAAGTAGTATTAACAACTCTCACAGTGACGAGCAGTAAGTAGTATTAACAACAACACTCACAGTGAAGAGCAGTAAGTAGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU555390 lncRNA downstream 33586 24803566 ~ 24804010 (-) True G488620
TU555387 lncRNA downstream 36885 24799516 ~ 24800711 (-) True G488618
TU555342 lncRNA downstream 49491 24744862 ~ 24788105 (-) True G488574
TU555287 lncRNA downstream 122545 24714447 ~ 24715051 (-) True LOC110525585
TU555303 lncRNA downstream 136838 24700369 ~ 24700758 (-) True G488535
TU555421 lncRNA upstream 913 24839999 ~ 24842967 (-) True G488646
TU555478 lncRNA upstream 68138 24907224 ~ 24907442 (-) True G488693
TU555479 lncRNA upstream 80047 24919133 ~ 24919436 (-) True G488694
TU555482 lncRNA upstream 82099 24921185 ~ 24921431 (-) True G488697
TU555485 lncRNA upstream 84593 24923679 ~ 24923888 (-) True G488700
XM_036979705.1 mRNA downstream 122506 24655788 ~ 24715090 (-) False LOC110525585
XM_036979706.1 mRNA downstream 122506 24655788 ~ 24715090 (-) False LOC110525585
XM_036979708.1 mRNA downstream 122507 24655788 ~ 24715089 (-) False LOC110525585
XM_036979707.1 mRNA downstream 122508 24655788 ~ 24715088 (-) False LOC110525585
XM_036979704.1 mRNA downstream 203238 24597970 ~ 24634358 (-) True ep400
XM_021605835.2 mRNA upstream 34137 24873223 ~ 24885005 (-) False piwil1
XM_021605836.2 mRNA upstream 34137 24873223 ~ 24885005 (-) True piwil1
XM_021605837.2 mRNA upstream 72541 24911627 ~ 24917852 (-) True LOC110525589
XM_021605839.2 mRNA upstream 333775 25172861 ~ 25375480 (-) False LOC110525591
XM_036979719.1 mRNA upstream 333775 25172861 ~ 25375482 (-) False LOC110525591
TU555288 other downstream 128176 24706571 ~ 24709420 (-) False LOC110525585
TU555289 other downstream 162695 24660897 ~ 24674901 (-) False LOC110525585
TU555138 other downstream 483773 24353533 ~ 24353823 (-) True G488386
TU554111 other downstream 1119813 23713875 ~ 23717783 (-) True LOC110525552
TU554039 other downstream 1252042 23583036 ~ 23585554 (-) True LOC110525180
TU555826 other upstream 267119 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 657877 25496963 ~ 25497489 (-) True G489511
TU557298 other upstream 1440621 26279707 ~ 26283169 (-) True LOC110525606
TU557449 other upstream 1616646 26455732 ~ 26457841 (-) True tmem230b
TU557799 other upstream 1708136 26547222 ~ 26551627 (-) True LOC110525619

Expression Profile