RNA id: TU557969


Basic Information

Item Value
RNA id TU557969
length 1404
lncRNA type read_through
GC content 0.40
exon number 2
gene id G490982
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26755780 ~ 26818625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATTGGGAAATTATGGAAAGGATGACAAACATTTTAGTTACTTGTCTCCTGGGCAAATTAAAACatacatagattttttttaaatacatctGACACTCACATACATCTGACACTCACTGCATACATACACTTTAAATATAACCTTTTTTTCTCATTATCAAAATCCTGAATTTAGCTACACGTGACTAAAATATTATCCATTGCACTATTGCACCAATAATCCCCAGGCTAAGCTTCGGGTGGAAGTGGCTGGGAACAGAGTATGTGAGCAGAGCGTTCCCAATTCGACTGGGGCGTGATTCCCGAAGGCTGGAGCGTAGGGCTTTGCTCAGGCTCCAATTTCGCTCTCACTTCACGAGCTCAGGCCAGTACCACTCACTTCACAAGCTCAGGGCATGcccggcccagcatgcatttgcagtctacttgtgtgctgctaactatagctactatCATGGAGTTCGCTAAATATTTTCAAAAAGAAACTGATGAAACACACAGGTGCTTAATGAAGGTGACTTACCAAGACGAtgaccaagagcaagagagggagtgcgGTGATATAGTGTACACAACTAAATAATctttgtggaatctgaaaagacacgtATTCTGAAAGTATGATCGTGTACTTACTGCATGCACATGCTAAAAGAAAGGTACGAGGTGGGTAGATAactgtgtcattgtagcaaagtatttctAAACAAAAAATCTGATCTCTTAAACCTTAAGTGTATTTTtgttctattatctatacaacaggccataattgattttggcccaataggccTGGCATATTCACACATTCAAGCAGCTTTCTtttttgattgggttattttgcctaaaaacaTTCAGGCCTACCTATTACCCAGCAAGAGTGGCCAAAGGGGTGTTTAGCATCCCCTGGAGCTCTGCACGTGTGGGGAGGGTATTCTCCGCTGCTGGCCGTCTCTCCAGGCACCCACCATgcatgagcctgaagccacagactggCCAAACTTGTATTTAAACAAATTCAAAGGCACTAATAGGTCATTTTTTGGTGTATtttgtatttaattctaagtaaGTCACAGCCTATATATGCAATTAATAAACTAGaatgatttaatacaacaaaAGGTGGCTCTTTGAATGTGTCACACTCGCAAATGCTTCACTATGTATTTTTTGTAgactatagccttgaaataatttaAATTATGtagcctaaataattcattttcgttccttcttaggctccctgtctggATTTCCAACCGCTCAACTCCCTCACATGCTCTGGCTGGGAACGAGATTATACATAAAACATATCCTttaatagagtaccacagtatgaatctcaatacccataaaacctagcggtcaaacagggaaatggttccaatcGGTTCTCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557963 lncRNA downstream 5217 26746242 ~ 26750563 (-) True G490978
TU557938 lncRNA downstream 26296 26707102 ~ 26729484 (-) True G490963
TU557869 lncRNA downstream 107265 26608848 ~ 26648515 (-) True LOC110525621
TU557834 lncRNA downstream 211194 26543490 ~ 26544586 (-) True G490886
TU557796 lncRNA downstream 220328 26481087 ~ 26535452 (-) False LOC110525619
TU558017 lncRNA upstream 4268 26822893 ~ 26823157 (-) True G491027
TU558441 lncRNA upstream 220419 27039044 ~ 27039874 (-) True G491417
TU558505 lncRNA upstream 290749 27109374 ~ 27110138 (-) True G491475
TU558465 lncRNA upstream 319531 27138156 ~ 27140754 (-) True G491435
TU558522 lncRNA upstream 326254 27144879 ~ 27145306 (-) True G491492
LOC110525624 mRNA downstream 15137 26738279 ~ 26740643 (-) True LOC110525624
XR_002473788.2 mRNA downstream 22836 26726252 ~ 26732944 (-) True LOC110525623
XR_005052047.1 mRNA downstream 31754 26713456 ~ 26724026 (-) False LOC110525622
XM_021605910.2 mRNA upstream 9533 26828158 ~ 26876043 (-) False LOC110525627
XM_021605911.2 mRNA upstream 9533 26828158 ~ 26876043 (-) True LOC110525627
XR_005052451.1 mRNA upstream 58697 26877322 ~ 26877454 (-) True LOC118965120
XM_021605918.2 mRNA upstream 65238 26883863 ~ 26888305 (-) True LOC110525629
XM_021604982.2 mRNA upstream 432433 27251058 ~ 27252377 (-) True LOC110525021
TU557799 other downstream 204153 26547222 ~ 26551627 (-) True LOC110525619
TU557449 other downstream 297939 26455732 ~ 26457841 (-) True tmem230b
TU557298 other downstream 472611 26279707 ~ 26283169 (-) True LOC110525606
TU556319 other downstream 1258291 25496963 ~ 25497489 (-) True G489511
TU555826 other downstream 1649210 25106205 ~ 25106570 (-) True G489038
TU558306 other upstream 6242 26824867 ~ 26867158 (-) True G491291
TU558571 other upstream 397982 27216607 ~ 27244193 (-) True G491539
TU559251 other upstream 916371 27734996 ~ 27736978 (-) True LOC110525653
TU559292 other upstream 1008606 27827231 ~ 27835302 (-) False LOC110525655
TU561692 other upstream 2592590 29411215 ~ 29415314 (-) True G494389

Expression Profile