RNA id: TU558638


Basic Information

Item Value
RNA id TU558638
length 233
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G491602
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27320129 ~ 27320361 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacaaagtgctgtacagaaaacaggcctaaaaccccaaagagcatgcaatgcagatgtagaagcacggtggctaggaaaaactccctagaaagacaggaacctaggaagaaatctagagaggaaccaggccctgagaggtggccagtcctcttctggctgtgccgggttgagattacaacagtacatggccaagatgttcaaactttCATAGATGAcgagcagggtcaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU558634 lncRNA downstream 3029 27316878 ~ 27317100 (-) True G491598
TU558527 lncRNA downstream 127771 27153706 ~ 27192358 (-) True G491497
TU558522 lncRNA downstream 174823 27144879 ~ 27145306 (-) True G491492
TU558465 lncRNA downstream 179375 27138156 ~ 27140754 (-) True G491435
TU558505 lncRNA downstream 209991 27109374 ~ 27110138 (-) True G491475
TU558639 lncRNA upstream 47 27320408 ~ 27320638 (-) True G491603
TU559124 lncRNA upstream 175816 27496177 ~ 27506760 (-) True G492067
TU559201 lncRNA upstream 280984 27601345 ~ 27601642 (-) True G492122
TU559206 lncRNA upstream 286324 27606685 ~ 27607004 (-) True G492127
TU559229 lncRNA upstream 306919 27627280 ~ 27627646 (-) True G492145
XM_021605944.2 mRNA downstream 41578 27270821 ~ 27278551 (-) True LOC110525638
XM_021604982.2 mRNA downstream 67752 27251058 ~ 27252377 (-) True LOC110525021
XM_021605918.2 mRNA downstream 431824 26883863 ~ 26888305 (-) True LOC110525629
XR_005052451.1 mRNA downstream 442675 26877322 ~ 26877454 (-) True LOC118965120
XM_021605911.2 mRNA downstream 444086 26828158 ~ 26876043 (-) True LOC110525627
XM_021605946.2 mRNA upstream 22584 27342945 ~ 27351871 (-) False LOC110525639
XM_021605945.2 mRNA upstream 22584 27342945 ~ 27351877 (-) False LOC110525639
XM_021605947.2 mRNA upstream 22584 27342945 ~ 27351884 (-) False LOC110525639
XM_036979750.1 mRNA upstream 22584 27342945 ~ 27351891 (-) True LOC110525639
XM_036979754.1 mRNA upstream 225247 27545608 ~ 27560519 (-) False LOC110525643
TU558571 other downstream 75936 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 452971 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 768502 26547222 ~ 26551627 (-) True LOC110525619
TU557449 other downstream 862288 26455732 ~ 26457841 (-) True tmem230b
TU557298 other downstream 1036960 26279707 ~ 26283169 (-) True LOC110525606
TU559251 other upstream 414635 27734996 ~ 27736978 (-) True LOC110525653
TU559292 other upstream 506870 27827231 ~ 27835302 (-) False LOC110525655
TU561692 other upstream 2090854 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 2158294 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 2181892 29502253 ~ 29503391 (-) True LOC110525684

Expression Profile