RNA id: TU559394


Basic Information

Item Value
RNA id TU559394
length 205
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G492289
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27909566 ~ 27909770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCTGGCAAAGCCAATTTCTAATATCCATCATGCTATCAGCTACCTACCTGTTAACATTAGCTATATTCCAACCAGCTGGGCAGTGAAACTTTTTTTTGTAGTACTTAACTTTGAAAGTAAACCTAAACGGTCAAATTGACCCCGCCTTTCTACTGTGACAGccaatcaaaatgcgttttttttcAACTGTTAAAATGTGTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559388 lncRNA downstream 13048 27896282 ~ 27896518 (-) True G492284
TU559383 lncRNA downstream 16466 27892868 ~ 27893100 (-) True G492279
TU559312 lncRNA downstream 23932 27836428 ~ 27885634 (-) True LOC110525655
TU559308 lncRNA downstream 115820 27791875 ~ 27793746 (-) True G492208
TU559307 lncRNA downstream 132619 27776556 ~ 27776947 (-) True G492207
TU559400 lncRNA upstream 4505 27914275 ~ 27914474 (-) True G492295
TU559402 lncRNA upstream 5277 27915047 ~ 27915297 (-) True G492297
TU559403 lncRNA upstream 5737 27915507 ~ 27915735 (-) True G492298
TU559647 lncRNA upstream 156767 28066537 ~ 28066746 (-) True G492526
TU559648 lncRNA upstream 158985 28068755 ~ 28069035 (-) True G492527
XM_036979762.1 mRNA downstream 42286 27832252 ~ 27867280 (-) False LOC110525655
XM_036979766.1 mRNA downstream 42286 27832252 ~ 27867280 (-) False LOC110525655
XM_021605981.2 mRNA downstream 42286 27834775 ~ 27867280 (-) False LOC110525655
XM_021605979.2 mRNA downstream 42286 27835068 ~ 27867280 (-) False LOC110525655
XM_036979770.1 mRNA downstream 42287 27832252 ~ 27867279 (-) False LOC110525655
XM_021605986.2 mRNA upstream 118406 28028176 ~ 28044286 (-) False LOC110525658
XM_021605984.2 mRNA upstream 118406 28028176 ~ 28044300 (-) True LOC110525658
XM_021605987.2 mRNA upstream 135035 28044805 ~ 28105169 (-) True LOC110525659
XM_036979773.1 mRNA upstream 201198 28110968 ~ 28180719 (-) False LOC110525660
XM_036979772.1 mRNA upstream 201198 28110968 ~ 28180720 (-) True LOC110525660
TU559292 other downstream 74264 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 172588 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 665373 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 1042408 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 1357939 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 1501445 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1568885 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1592483 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 1765553 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 2616916 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile