RNA id: TU559648


Basic Information

Item Value
RNA id TU559648
length 281
lncRNA type intronic
GC content 0.31
exon number 1
gene id G492527
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28068755 ~ 28069035 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTAACACAGCTTAACATACTTAACAGATAgttttgttgacgctgagaatggaatggatctgttttttgttttttttactttctGAAAATGTTCTTTGAACGATACTAATGTTTTCTTGTGTTTTCTATTGAAAGTTCTCTTAACGTTCTGAGAAAATGACTTCAAATTGAACCATGACTAAACCTGCAGAAAACGTTAtgttgaagtactgaaattccaacagaagaacgttgtttcttaacattctctgaacaatttgagaaTTACTTTATATAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559647 lncRNA downstream 2009 28066537 ~ 28066746 (-) True G492526
TU559403 lncRNA downstream 153020 27915507 ~ 27915735 (-) True G492298
TU559402 lncRNA downstream 153458 27915047 ~ 27915297 (-) True G492297
TU559400 lncRNA downstream 154281 27914275 ~ 27914474 (-) True G492295
TU559394 lncRNA downstream 158985 27909566 ~ 27909770 (-) True G492289
TU559681 lncRNA upstream 59310 28128345 ~ 28129238 (-) True G492556
TU559694 lncRNA upstream 82324 28151359 ~ 28153068 (-) True G492569
TU559719 lncRNA upstream 112461 28181496 ~ 28181863 (-) True G492594
TU559721 lncRNA upstream 116535 28185570 ~ 28185808 (-) True G492596
TU560076 lncRNA upstream 187687 28256722 ~ 28257634 (-) True LOC110525663
XM_021605984.2 mRNA downstream 24455 28028176 ~ 28044300 (-) True LOC110525658
XM_021605986.2 mRNA downstream 24469 28028176 ~ 28044286 (-) False LOC110525658
XR_002473803.2 mRNA downstream 201476 27835074 ~ 27867279 (-) False LOC110525655
XM_036979773.1 mRNA upstream 41933 28110968 ~ 28180719 (-) False LOC110525660
XM_036979772.1 mRNA upstream 41933 28110968 ~ 28180720 (-) True LOC110525660
XM_021605990.2 mRNA upstream 124473 28193508 ~ 28242572 (-) False LOC110525662
XM_036979774.1 mRNA upstream 124473 28193508 ~ 28242572 (-) False LOC110525662
XM_021605992.2 mRNA upstream 124473 28193508 ~ 28242573 (-) False LOC110525662
TU559292 other downstream 233453 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 331777 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 824562 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 1201597 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 1517128 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 1342180 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1409620 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1433218 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 1606288 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 2457651 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile