RNA id: TU560279


Basic Information

Item Value
RNA id TU560279
length 273
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G493100
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28645501 ~ 28645773 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataccaaattagcataccccctgagtctcttccctgtttcacatctggtagtttggtggatgggactaccagctctcagtaacctagagggcaaccagtgggtctgtctcctctataccatgtttcttgttggATGACattgtctgtatttccaatttctttgatgaagtcttggttcctgctctttaggccaaaggcagatgacctcacacactgtacagtaaaggcgttgtgttccatagtgtctagtgttgtttttgtgtggtttaggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560278 lncRNA downstream 1849 28643354 ~ 28643652 (-) True G493099
TU560277 lncRNA downstream 4921 28640221 ~ 28640580 (-) True G493098
TU560275 lncRNA downstream 5702 28639543 ~ 28639799 (-) True G493096
TU560274 lncRNA downstream 11190 28634054 ~ 28634311 (-) True G493095
TU560273 lncRNA downstream 11793 28633494 ~ 28633708 (-) True G493094
TU560295 lncRNA upstream 18754 28664527 ~ 28664885 (-) True G493116
TU560365 lncRNA upstream 78584 28724357 ~ 28724817 (-) True G493185
TU560419 lncRNA upstream 125317 28771090 ~ 28771341 (-) True G493234
TU560436 lncRNA upstream 138103 28783876 ~ 28784129 (-) True G493251
TU560444 lncRNA upstream 145404 28791177 ~ 28791497 (-) True G493259
XM_036979786.1 mRNA downstream 89488 28552264 ~ 28556013 (-) True zgc:153044
XM_021606020.2 mRNA downstream 89908 28552264 ~ 28555593 (-) False zgc:153044
XM_036979787.1 mRNA downstream 91110 28552264 ~ 28554391 (-) False zgc:153044
XM_036979778.1 mRNA downstream 177636 28455590 ~ 28467865 (-) True ube2d4
XM_021606018.2 mRNA downstream 177696 28455590 ~ 28467805 (-) False ube2d4
XM_021606021.2 mRNA upstream 343634 28989407 ~ 29010716 (-) False LOC110525678
XM_036979788.1 mRNA upstream 343634 28989407 ~ 29010716 (-) False LOC110525678
XM_021606022.2 mRNA upstream 377435 29023208 ~ 29070012 (-) False LOC110525679
XM_021606024.2 mRNA upstream 377435 29023208 ~ 29070012 (-) True LOC110525679
XM_036979791.1 mRNA upstream 424943 29070716 ~ 29269113 (-) False LOC110526490
TU559292 other downstream 810199 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 908523 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 1401308 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 1778343 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 2093874 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 765442 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 832882 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 856480 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 1029550 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 1880913 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile