RNA id: TU561692


Basic Information

Item Value
RNA id TU561692
length 3199
RNA type TUCP
GC content 0.42
exon number 4
gene id G494389
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29411215 ~ 29415314 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAATAGGTAAGAGGGTAGCGCGAGTGATGATGGAGCGAGCACCTGTTAAAAGTGGCTCCCATCGTCAACACTCACAGGGCTAAGAGGAGGTGCTATTCTAGTGACTCCAACAATAAGGACAGGAGTCAAACCACATCATTAGTGTAAATAATGGATTTCATTATCACAGCTTTTTTTCACTGGATCTCAAAGCACTACATGTACTAGCTTGGTCACTGACAGAGGTTAACAGGTATTTGTACTAGCTTGGTCACTGACAGAGGTTAACAGGTATTTGTACTAGCTTGGTCACTGACAGTGCTTAACAGGTATTTTTACTAGCTTGGTCACTGACAGTGCTTAACAGGTATTTTTACTAGCTTGGTCACTGACAGTGCTTAACAGGTGTTTTTCATAAATACATGGTTCTTAAAGCATACTATCAATCAATACTTTATAGAATAGGCAGGCAAGTGATATTGAACAAACATTCTGAAATGAACCCCTGTTATCACTCCCTCCGTAGGCCCACACCATGTACCAGGTGGGTCTAATGGAGACAGACCAGCACATTGAGTTCTTCTGGACGGCCCTGGAGATGTTCACACAGGAGGAGCTCTGCAAGTTCATAAAGTTTGCCTGCAACCAGGAGCGCATCCCCTTTACCTGCCCCTGCAAGGACGGGGGCCCGGACACTGCCCACGTACCCCCCTACCCCATGAAGATCGCCCCTTCGGACGGGGCAGCAGGTTCGCCAGACTCTCGCTACATCCGGGTGGAGACCTGTATGTTTATGGTGAAGCTGCCCCAGTACAGCTCCCTGGATGTGATGCTGGAGAAGCTGCGCTACTCCATCCACTACCGTGAGGACCCTCTCAGCGGCTAAAGGGACCTGATGGGTGGAGTACACCACCTCCATATGATGCCGCTTCAACACCAACCCTACTATTTCTTACCCATACAGCCCCACCCTTTCATCACCCCATCCCCCGCCCACCTTTACCTCCGCCCTCTCCTGAACCTTCAGCTGGGACTACCCACAGAACAGAAGGCCAGCCTGCTTTACCAAGAACACACTGAAGCTTTTCCTTTCTTGGCTTGTTTTATGTTTGGCTTTGTACCAGCGCTTCATTTCAATAACATTGTAATCAGGTTGAGCCTTTCAGGAGTGTGTTTTGACTCATGTTTTCAGACCTGATATAGGGGAGTTCAGCCCCACTTGCCTTGACACTGATGTTGGTGTCTCTTCTGGTTGCACTGAGTTTTGGAGTGACATTGAGGTAACTCTTTGATTACTACACTGAGTGGGAGGGAGCTGTGACAGGGCACATACCATTATTGTTTATTGGGGAAGTTAATCTCTTCCACCTTATTTCCCCTCACTTTTCTTTATtcttcctatcctccctctctttcagagGTCCTTACAGTTCCCCTCCCACACACTACCAGAGGGGACTATCTTTCTAAGGCATGCCTTTACCACAAGCAGCACTTCCTCAAAAATCGGAGAGGGAGACTCTGTGTGAAAAGGGAACCCCAAATATTCCTCTGGAAGCAAGAGTTGAGTATTGTTTGATGTTAGAGTTCATTTTAGATATTAAGTGGACTACTATGATGCTGCCTATTTATTACCAGTTCAGCTCTCTGCATTCAAAACCTTGACAAGCGCTGTATAGGACATTATATAGTTACTGCCTGTAAAGTTGGACTGCTAAAGGACAAAACTAGCTATCTGCCTATATTATAcggtgaatatattttattcaAATCTATTAAGAGGGTATATAAGTCTTGTAAAAAGTCATTTTAATCTATTAAGTTGCAGCTTTGAGTTTAAGGTATCCTAGTAGCTGTGGCAGAAGGGTAAGGTCACGTACACTGAAGCTGGACTACCAGGCTAAAGCTCTACCTGGTTGCCAGATCTGGCCTTCTGTGTTTCCAGATCTCCTATACTTGCATTTCAGGTTGTGAAACCTGTGTTTCTTtgtgaaatgagagagagatgttctCCTGAGCTGCTTGTGTGCTACTGCTACTGAATGTGGGCTGACTCCCCTTGCccaacacacaatacacacaccagGGGGTCGAATTCACTTTCATTTTGCCTTTTTATAGATTTCCTGTGATGAATGAGCAggatttctgtttgtttttttgttttattttacccaTAACCAAAATGTTTAGCTGTGTAaagaaaaaatgtaaatatactTCTACATTATATTTGATGGCAGTTTTATAAAATTGTTGCATCACTTCaccaattattatttatttttttctgcaCTATTCTTCCAgggaaaaaatattatttaaaaatgAGCTAACTAGGATATTCTTTATTGGATATCCAGTTTGTTggtttttaattttttacaaatgttgaAATTACCAGTAAAATATCACCTTAATGTCTTGCAGGGCCGGATTACCGAACGGGCACGCAGGgcaaccccccccctccccccaaaaatagCATAtgatagcaaaatgtgtagaattgcaggaaattagctttaaaatgggAAAATCTTATCGTAGCCCCTTGGCAAAaagtgtagaattgcagtaaattCGCTTTAACACTGCAAAAAAAATCTTAGCCTCATGACTAAATGTGTAGAACATAattataaaactgcacatttttctctgcACCATGGCTTACTGTGTTGAAATGCATTATGTTTTTGGGGACGTCGGTTCCCCCGGGGCCCCAAATGCAGTCGTCCGGCCCTGATGTCTTGTAACTCAGATGGATTCTATCACTCATTCTCTTCTACTCCATGGTGAAACATGTTTTCTTGTGTGAGTAAAACAGCCGTTTGACTTGGACGGGACCTGAAGAACACAACGACAGTTACCGCAAAATATTTGAGATGGATGTTTGGATTGCTTGCCAATTTAGTTTTGGTTTTGTTCTTTTAAAGGGTAAATCGCTGCTAACAAGGACGCTCCTTCTATTCCGACCTCTTTTGGAGGAGTAGAACAGACCATTACAAAGGACATTCATACGAAGAGGTGTTGAGAGAAGAAAATGTGTTCTGTACATTTACTTGATATTTATTACAATTATTTATGGTTGCATTAAATTAACTTTTACTGTCTTACCTCTGCACATCAAACATAACACAGATCTTTAAAATGGACTATACAGGGGTAAAGGATAAGATGGAGTTTGAGATTTCTGTGTCACAATAAAACATGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561679 lncRNA downstream 3499 29399840 ~ 29407716 (-) True G494378
TU561676 lncRNA downstream 17308 29393704 ~ 29393907 (-) True G494376
TU561659 lncRNA downstream 36937 29374023 ~ 29374278 (-) True G494359
TU561656 lncRNA downstream 41992 29368975 ~ 29369223 (-) True G494357
TU561655 lncRNA downstream 42782 29368154 ~ 29368433 (-) True G494356
TU561695 lncRNA upstream 37270 29452584 ~ 29453016 (-) False LOC110525681
TU561706 lncRNA upstream 40045 29455359 ~ 29455568 (-) True G494401
TU561707 lncRNA upstream 43967 29459281 ~ 29459582 (-) True G494402
TU561709 lncRNA upstream 48577 29463891 ~ 29464214 (-) True G494404
TU561810 lncRNA upstream 195509 29610823 ~ 29611022 (-) True G494496
XM_036979789.1 mRNA downstream 12327 29070716 ~ 29398888 (-) False LOC110526490
XM_036979790.1 mRNA downstream 12327 29070716 ~ 29398888 (-) False LOC110526490
XM_036979791.1 mRNA downstream 142102 29070716 ~ 29269113 (-) False LOC110526490
XM_021606022.2 mRNA downstream 341203 29023208 ~ 29070012 (-) False LOC110525679
XM_021606024.2 mRNA downstream 341203 29023208 ~ 29070012 (-) True LOC110525679
XM_036979797.1 mRNA upstream 86878 29502192 ~ 29520677 (-) False LOC110525684
XM_036979798.1 mRNA upstream 86878 29502192 ~ 29520677 (-) False LOC110525684
XM_036979800.1 mRNA upstream 86878 29502192 ~ 29520688 (-) False LOC110525684
XM_036979799.1 mRNA upstream 86878 29502192 ~ 29520980 (-) False LOC110525684
XM_021606028.2 mRNA upstream 111469 29526783 ~ 29575598 (-) False LOC110525685
TU559292 other downstream 1575913 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 1674237 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 2167022 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 2544057 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 2859588 26547222 ~ 26551627 (-) True LOC110525619
TU561696 other upstream 63341 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 86939 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 260009 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 1111372 30526686 ~ 30527546 (-) True LOC110525714
TU563013 other upstream 1130088 30545402 ~ 30549450 (-) True G495554

Expression Profile