RNA id: TU561834


Basic Information

Item Value
RNA id TU561834
length 355
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G494515
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29635128 ~ 29635482 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgtgaagagcacagggcgccagtggcgaatttgccaatcttggtgttctctggcaaatgaaaaacgtcctgcacggtgttgggctgtaagcacaacccccacctgtggacgacgggccctcataccaccctcatggagtctgtttctgaccgtttgagcagacacatgcacatttgtggcctgctggaggtcattttgcagggctctggcagtgctcctccttgcacaaaggcggaggtagcggtcctactgctgggttgttgccctcctacggcctcctccacgtctcctgatgtactggcctgtctcctggtagcgcctccatgctttggacactacgctgacagacacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561830 lncRNA downstream 2689 29632237 ~ 29632439 (-) True G494511
TU561826 lncRNA downstream 6341 29628452 ~ 29628787 (-) True G494507
TU561825 lncRNA downstream 6793 29627978 ~ 29628335 (-) True G494506
TU561824 lncRNA downstream 8425 29626492 ~ 29626703 (-) True G494505
TU561823 lncRNA downstream 9412 29625460 ~ 29625716 (-) True G494504
TU561835 lncRNA upstream 799 29636281 ~ 29636526 (-) True G494516
TU561836 lncRNA upstream 1154 29636636 ~ 29636966 (-) True G494517
TU561849 lncRNA upstream 14840 29650322 ~ 29654088 (-) False LOC110525693
TU561850 lncRNA upstream 14840 29650322 ~ 29654088 (-) True LOC110525693
TU561853 lncRNA upstream 22867 29658349 ~ 29658624 (-) True G494530
LOC110526522 mRNA downstream 38319 29595416 ~ 29596809 (-) True LOC110526522
XM_021606028.2 mRNA downstream 59530 29526783 ~ 29575598 (-) False LOC110525685
XM_021606031.2 mRNA downstream 59530 29526783 ~ 29575598 (-) True LOC110525685
XM_036979799.1 mRNA downstream 114148 29502192 ~ 29520980 (-) False LOC110525684
XM_036979800.1 mRNA downstream 114440 29502192 ~ 29520688 (-) False LOC110525684
XR_005052054.1 mRNA upstream 14721 29650203 ~ 29653776 (-) False LOC110525693
XM_021606056.2 mRNA upstream 70577 29706059 ~ 29754385 (-) False LOC110525694
XM_021606052.2 mRNA upstream 70577 29706059 ~ 29754400 (-) False LOC110525694
XM_021606053.2 mRNA upstream 70577 29706059 ~ 29754401 (-) False LOC110525694
XM_021606054.2 mRNA upstream 70577 29706059 ~ 29754401 (-) False LOC110525694
TU561743 other downstream 131737 29502253 ~ 29503391 (-) True LOC110525684
TU561696 other downstream 151782 29478655 ~ 29483346 (-) True LOC110525681
TU561692 other downstream 219814 29411215 ~ 29415314 (-) True G494389
TU559292 other downstream 1799826 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 1898150 27734996 ~ 27736978 (-) True LOC110525653
TU561865 other upstream 39841 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 891204 30526686 ~ 30527546 (-) True LOC110525714
TU563013 other upstream 909920 30545402 ~ 30549450 (-) True G495554
TU563022 other upstream 939636 30575118 ~ 30575573 (-) True G495560
TU564400 other upstream 2025911 31661393 ~ 31661618 (-) True G496772

Expression Profile