RNA id: TU561863


Basic Information

Item Value
RNA id TU561863
length 550
lncRNA type antisense_over
GC content 0.61
exon number 1
gene id G494540
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29673676 ~ 29674225 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGAGGAGATGGCAGGAACAATCCTTTGCACACGGCGTGTCTTTTTGTTGGAGCAAGAGGGCTGGATGGGTCTGGGCAGGGCGAAGGTCTGGGGGTGTTGTGGGGTGGCGGCAGGCGAGGGTGGCAGGGGCTGGAGGGGTGGGGTTGTAGGTTCACGGTTTAGGGAGCTGAAGTCAGAGCTGTGACtgaaggtggtggcagcatcactggGTAGAACAGTGGAGGTGGTTGTATGTGTGATGACAGATGAGGGCGGGGAACCGTCCAGGCTTGTGGCATCGTCTAGGGTTGGGGGGGCTACTAGTGTTGGGGTGGCAGCACCCTGGCAGGTCTGGGTGTGCCGCACCGTGGGAAGGGCTGAGGTTTGCCTGAGGGAGGAGCCTCCAGCCTGAGCACTAGGGGGCACCGGCCCAGAGAACAGAGGCATGTAGTTCTGTACGTAAGAGGGGCTTCCACTGGTTTGATTGGACATGAGGGAGGAGATAGTCAGGGGGGCTGGGGAGGCGATAAGTCTGTGGTCATGACTGACGGACGGGAGGTCAGCTGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561860 lncRNA downstream 6139 29667282 ~ 29667537 (-) True G494537
TU561853 lncRNA downstream 15052 29658349 ~ 29658624 (-) True G494530
TU561849 lncRNA downstream 19588 29650322 ~ 29654088 (-) False LOC110525693
TU561850 lncRNA downstream 19588 29650322 ~ 29654088 (-) True LOC110525693
TU561836 lncRNA downstream 36710 29636636 ~ 29636966 (-) True G494517
TU561867 lncRNA upstream 3277 29677502 ~ 29678117 (-) True G494544
TU561869 lncRNA upstream 5857 29680082 ~ 29680686 (-) True G494546
TU561879 lncRNA upstream 18805 29693030 ~ 29695738 (-) True G494556
TU561903 lncRNA upstream 123916 29798141 ~ 29798513 (-) True LOC118965073
TU561948 lncRNA upstream 168558 29842783 ~ 29848905 (-) True G494621
XR_005052054.1 mRNA downstream 19900 29650203 ~ 29653776 (-) False LOC110525693
LOC110526522 mRNA downstream 76867 29595416 ~ 29596809 (-) True LOC110526522
XM_021606028.2 mRNA downstream 98078 29526783 ~ 29575598 (-) False LOC110525685
XM_021606031.2 mRNA downstream 98078 29526783 ~ 29575598 (-) True LOC110525685
XM_036979799.1 mRNA downstream 152696 29502192 ~ 29520980 (-) False LOC110525684
XM_021606056.2 mRNA upstream 31834 29706059 ~ 29754385 (-) False LOC110525694
XM_021606052.2 mRNA upstream 31834 29706059 ~ 29754400 (-) False LOC110525694
XM_021606053.2 mRNA upstream 31834 29706059 ~ 29754401 (-) False LOC110525694
XM_021606054.2 mRNA upstream 31834 29706059 ~ 29754401 (-) False LOC110525694
XM_021606045.2 mRNA upstream 31834 29706059 ~ 29754402 (-) False LOC110525694
TU561743 other downstream 170285 29502253 ~ 29503391 (-) True LOC110525684
TU561696 other downstream 190330 29478655 ~ 29483346 (-) True LOC110525681
TU561692 other downstream 258362 29411215 ~ 29415314 (-) True G494389
TU559292 other downstream 1838374 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 1936698 27734996 ~ 27736978 (-) True LOC110525653
TU561865 other upstream 1098 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 852461 30526686 ~ 30527546 (-) True LOC110525714
TU563013 other upstream 871177 30545402 ~ 30549450 (-) True G495554
TU563022 other upstream 900893 30575118 ~ 30575573 (-) True G495560
TU564400 other upstream 1987168 31661393 ~ 31661618 (-) True G496772

Expression Profile