RNA id: TU561869


Basic Information

Item Value
RNA id TU561869
length 605
lncRNA type intronic
GC content 0.40
exon number 1
gene id G494546
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29680082 ~ 29680686 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagccaccctttgccttgatgacagttttgtacactcttggcattctctcaaccagcttcatgaggtagacacctggaattaagttaaattaacaggtgtgccttgttaaaggttaatttgtggaatttctttttgAGCCAATtacttgtgttgtgacaaggtaggggtggtatacagaagatagccctatttggtaaaataccaagtccatattatgggaagaacagctcaaataggcaaagagaaacgacagtccatcatcactttaaaacatgaaggtcagtcattatggaacatttcaagaactttgaaagtttcttcaagtgcaattgcaaaaaccatcaagcgcaatgatgaaactggctctcatgaggaccgccacaggaaaggaagacccatagttacctctgctgcagaggataagtccattagagttaactgcacctcagattgcagcccaaataaatgttttacagagttcaagtaacagacacatctcaacatcaactgttgagaggagactgcatgaatcaggccttcatggtcgaatttctgcaaagaaaccactactaaaaggacaccaataataagaagagacatgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU561867 lncRNA downstream 1965 29677502 ~ 29678117 (-) True G494544
TU561863 lncRNA downstream 5857 29673676 ~ 29674225 (-) True G494540
TU561860 lncRNA downstream 12545 29667282 ~ 29667537 (-) True G494537
TU561853 lncRNA downstream 21458 29658349 ~ 29658624 (-) True G494530
TU561849 lncRNA downstream 25994 29650322 ~ 29654088 (-) False LOC110525693
TU561879 lncRNA upstream 12344 29693030 ~ 29695738 (-) True G494556
TU561903 lncRNA upstream 117455 29798141 ~ 29798513 (-) True LOC118965073
TU561948 lncRNA upstream 162097 29842783 ~ 29848905 (-) True G494621
TU561951 lncRNA upstream 169643 29850329 ~ 29850535 (-) True G494624
TU561977 lncRNA upstream 220024 29900710 ~ 29925721 (-) True G494645
XR_005052054.1 mRNA downstream 26306 29650203 ~ 29653776 (-) False LOC110525693
LOC110526522 mRNA downstream 83273 29595416 ~ 29596809 (-) True LOC110526522
XM_021606028.2 mRNA downstream 104484 29526783 ~ 29575598 (-) False LOC110525685
XM_021606031.2 mRNA downstream 104484 29526783 ~ 29575598 (-) True LOC110525685
XM_036979799.1 mRNA downstream 159102 29502192 ~ 29520980 (-) False LOC110525684
XM_021606056.2 mRNA upstream 25373 29706059 ~ 29754385 (-) False LOC110525694
XM_021606052.2 mRNA upstream 25373 29706059 ~ 29754400 (-) False LOC110525694
XM_021606053.2 mRNA upstream 25373 29706059 ~ 29754401 (-) False LOC110525694
XM_021606054.2 mRNA upstream 25373 29706059 ~ 29754401 (-) False LOC110525694
XM_021606045.2 mRNA upstream 25373 29706059 ~ 29754402 (-) False LOC110525694
TU561865 other downstream 4509 29675323 ~ 29675573 (-) True G494542
TU561743 other downstream 176691 29502253 ~ 29503391 (-) True LOC110525684
TU561696 other downstream 196736 29478655 ~ 29483346 (-) True LOC110525681
TU561692 other downstream 264768 29411215 ~ 29415314 (-) True G494389
TU559292 other downstream 1844780 27827231 ~ 27835302 (-) False LOC110525655
TU562998 other upstream 846000 30526686 ~ 30527546 (-) True LOC110525714
TU563013 other upstream 864716 30545402 ~ 30549450 (-) True G495554
TU563022 other upstream 894432 30575118 ~ 30575573 (-) True G495560
TU564400 other upstream 1980707 31661393 ~ 31661618 (-) True G496772
TU564405 other upstream 1990292 31670978 ~ 31671927 (-) True G496777

Expression Profile