RNA id: TU562138


Basic Information

Item Value
RNA id TU562138
length 4645
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G494785
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 30173830 ~ 30179693 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTCAAAGATAATTCCATGTGCACAAAGATCTAGCTACAGCATACACCGACATTTCATTTATGCATTTTAAAAATGTTATGCACAAACGGACAATGAATGACACCAAAAACATGCTTCATGAAGGAAAGCAGACATTTATTACAGATCTTTGACATGAGAAATCAGTATCTAACCTCTGAAGACAGAAGCATTGAGACAAGATCCCTGTTCCTCAGGATGTCAGACCTATGTTGATGAAGAGCAGGAGGGGAGAAAGTACAAGGGGGAGGCACTCTTACACTCAGTAGCCAGAAGACTAGCCAGTGTCAAAATAATGAAAAGCACAGAGGGAAACCCTATCCATACAAACAAGTGACAGCTTGTAAACGAGGCTGGTTTCTCTGTACCACACCAGCCAAACGCTGCCATCTCTTTATGCAAGGATAAGGGGGGACTAAGAATGGCCTCATTGCATTGACCACACATGTATAGTCAATACAATCTCACCCCATACAACCGCAGTCCAAAATACTCATCACATCAGCCAGTGACAGTTCCGTGGAGGCAGACCAAAGCTTTTCTGTAGGACACTTTGGAACCATTGAAAATGTTACAGCATTCAGGAAAGTCAATgtgagataaaaaataaaaataaaaaccctctgGGGTTTAAGCTGCCTTCTGAATCCTTGGCTTCTCTGTATCCACACCAAGATTCAGAgaacaaataaatattttttaaaaacgttGTGCCAGTATTAAGAGCTCTTCATTGTAGCAAAGACAGCCTTCCTTCAGGATAAAGAGGGTGGTTTCTCTGTAGCTACACCTGCCCTCAATACCCAAGGAAGAGCCTTGACAAACCATTTTGTAAAAAAAGCAAAACAATATGAAATTAAACTACCTTTTGAAGGAGTTTAACATGACATGCCAATGACAACATGTTTTAAACAATCAAGTATAATCAACACCCCTACAGGCCATAGCAGTGACATAGCAGCTTCTGACTTTTCTGTATTACATCAGAACAGCACAGACATCTGCAGGGGCATCCCAGATTTGACTGCGTATATTCAAGAAAGTTACTTGAAAATAAATCAAGATTGTCTCGGTTCTCAGCCTGCAACGCATAGCAACAACTACTGACCCTTAACTTGCATCCTCAACAAATGATAAGGGGAGTGAAATAAAGCTTCAAAAAGGATTTTGGGGTGGGTCACAAAACCAGAAAGTAGTGTCAACCAAAGGAAAATGATTAAGGGGCTGGGGGCCTTCATTCAGTAGCACCAGTAAATTAATATGATCGCAACATGTAGCCTTGGTAGGTCAGCAAAATATTTGAAAGGACAGCTAAGCCCGAATAACCAAACTACAGAATGTACAGTTCCTCAGTCATGCTGGGCAGGGGCTAAGCGTTGTAGTGCGAAAGACCTCAATGGAAGAGGAAGACTTGGCTAACCGCATAAAGAGCCTAGTAACACTGTACAACAAAGTGGGACTTGAATGGGGTGTAGCTTAGAAATCGGGGCAGTAAAGGGAGCGAGACTGCTACAGCTGTATTAGATCAAACTAAAGCTgtgatatttttatttatttaactaggcaagtcagttatgaacaaatgcttatttacaatgacagcctaggaatagtgggttaactgccttgttcaggggcagaatgacagattttttgacctggtcagctctgggattcaatctagcaacatCCGGTTACaggcctaacgctctaaccactaggctacctgtcgccccaagGTGGATAGAGAATCTATAGACTGACGTTAACAATAGTTCCCATTTGAAAGCTGCAATTTTAAAACACTAAACACTATTAGAATAGCCTATGAGAAATACGCTTCATAACTAACTTGTCTTAATGCTTTTGATAAGCATACTAATTAAAAATGGCCTGCAAAGGCAAGCTTCGCAACTAAGGCATGTTCAAAACTACTGATTCAATTTTACTATCGTTTGTTCTACCTCATTACCTTAAACCAATCATGTTTAGGTAATTCAAAAACACCTTAACTTTGAGAGCCTTGAGCACCGTAAAATAAATTCATTGAAGTAGTAGCGGGAGAAAACCAGCTCGCATAAAAACTGAATTCATATGAAAAGGTAGAGAAAATATCAAATTAATGTTAGTTTTTGGTGACCTCAAAATAGAGTGtagaggtctaaggcactgctagctgtgccatcagagactctgggtccgagcccaggctctgtcgcagccggctgcgaccgggaggtccatggggcgatgcacaattggcctagcgtcggcCGGGTTAGGGACGGTTTGGTAGGGATTTCCTTGTCTCATCTCGCATTAGCGACTCCTGTGTCAGgcagggcgcagtgcacactgaccaggtcgccaggtgcagtgttccctccgacacattggtgcggctggcttccgggttggatgcgcgctgtgttaagaagctgtacggcttggttgggttgtgtttcggaggacgcatggctcgaccttcgtctctcccgagcccgtatgggagttgtagcgatgagacaagatattaACAATTGGATTCCACAAAATTGGTGAGAGAAAGGGGATAAAATtcctaaaaaaattaaaaatagggGTGttgtacaacaaaaaaaaaaagtctgattAGATCATCCCTAACCAAATCAGAATATCAAATTCAGTTCGTTACCCAGGTGTTCTGGCTCTGGACCAACCCATTGGCTTCTGGGACCAAttaaaggaaagggggatacctagtacaACTGAAGAGTCCTCCGCATTTAACcaaaatcagagaggtgcggggcaTAATCAACATCCAAGTTGtcgcgcccggggaacagtgtgttaactgccttgctcaggggcagaacagatttttaccttgccagcaCAGGGATTTAATCCAGCTACCTTCCCGTTAGAATGCGTTCTAGAAATCGGTGAGGTATCCAAACTCCGTGCGGAGAAGAAACTACGTCTGTAGCCCCGTCTAAATTGTGCTCTTGCATTCAGTAAGTTGCTTATTACATTTATTGAAATAGGTTATGCAGGCTAGAGCAAAGGAATAGGCCACTTGGAATGTCCTTGCCTGACCAGCTCTTTACAGCGTGATGCCAGTCAAGTTGAAATAGGCTAGTCCACGGTCACGTCACAATATCACCATCAACGACAGCCGTCAATCATATTCAATATTGTAATAGTCGTAAAACCCCAATACGTACTTTCAGATTTTCCTAACTTAATTGTTAAAAACAATTATAATCACATGTACTGTTCACACTTAAGTCCACAATGTAGGGGGGGAAAGAGGTTCTAAGTGTTGTGTTCTAGGTGGACAGATCAGCAAATTAGAATCAGAAGTTTTCTGCATCTGCCATAGCCTCCATTCAAGTCCCTTTCTGATGCGCTGTGAAACCAGATGAGTCAGTAGAGCGAGACGGCTGGTGGAAgagattagctagctaacattaacctcTCAACATTACTTTCCTGAAATATTTTGAGAATGTTGGTAGTATTACATTGACTACTAACAGCAAAAATACAGTACAGATGACTGGAGAGAGGAAGTAGAAAGGGGGTAGGGTTCTAATACCCCATTAGGGAAGAGAATTAAGGGCCTTTCACCCCCAAGACCATGTAGGCTTCTCTGTAGTATACACCAACAGGCCTGGGGGGAAAAGGCTTCACAAGTTTAGTATTTTAGCTTTTTGGGCATCTCCCATGGGAAGGAGTCCCGGCCAAAGTGGCCGTAGGCAGCGGTCCTCTGATACATAGGCTTCTTCAGCTCCAGCTCCCTGGAATACACAATCAACTCATTTAGCAGCCCATCACAGGAAATGACCTCAGATCAACATCAATTCTCAGCCATAATGCttaaaaaaaattttaaaaaaacaatAGGGAGTGTCGAGAGCCATGGAAAGAAACAATCAGAAAGGTTAATTAGGCCAGCTAataaagagggggaggaagggataaAGCGTCAACACTTACCCTGCTAACCAACTCATCCTTGAGCAGTGTGGGGACTGGAGCTTGGAGATTGAAAGCGCACTGATCCCATTTATGAAATGTCATTGAACTTTAACAGGGTCTGAGAAACCAATGACCTTCCAGTTGGATGTGAGCAGGAAACCCTTCATCGTGCTGGGTATTTAACATGCCATCTGACAACCTCAACTGTAGCTCTCGAAGCTTTAACCTTTGGCATGACATACTATACTTCACTGGCATTTAAAGCAAGACTGTTTGGGTAGGGGTGGAATATCAGGTTTGGCAAACTGACCACAAGCCCAGATTGCTGCTTTCTTACGTGTCAGTAGCTACTGGGTATGTCATTAATCACAGTAGCGAATCATATATTAAAGGGTTAGAACCATCTGAACACCAGCTGACAGCTCAGGCAGAACAGAAAGACAGGAAGCGTGAGTTAAAAAGGCGAGTGACAGAAGGGGCAGATTCAGAGAGGCACACAACTTCAAAAGGGGTACACTTTACCTGACAATGACACCAGGACGAAGGTCAAAGTTTCTCTTGACGATGTCCAGTAGCTCCCGCTCACTCTTCTGAGATGTGCCGTAGTGGAATATGGAGATTGAGAGGGGATGGGCTACTCCGATGGCATAGGCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU562142 lncRNA downstream 9302 30164024 ~ 30164528 (-) True G494787
TU562108 lncRNA downstream 32674 30102891 ~ 30141156 (-) True LOC110525706
TU562107 lncRNA downstream 68170 30102891 ~ 30105660 (-) False LOC110525706
TU562047 lncRNA downstream 181675 29991887 ~ 29992155 (-) True G494712
TU562003 lncRNA downstream 193120 29974486 ~ 29980710 (-) True G494671
TU562182 lncRNA upstream 6810 30185304 ~ 30185520 (-) True G494821
TU562187 lncRNA upstream 13781 30192275 ~ 30196117 (-) True G494826
TU562194 lncRNA upstream 39440 30217934 ~ 30218515 (-) True G494833
TU562202 lncRNA upstream 52240 30230734 ~ 30230958 (-) True G494841
TU562212 lncRNA upstream 58557 30237051 ~ 30237252 (-) True G494850
XM_036981739.1 mRNA downstream 66135 30105365 ~ 30107695 (-) False LOC110525706
XM_021606074.2 mRNA downstream 193052 29976158 ~ 29980778 (-) True LOC110525703
XR_005052057.1 mRNA downstream 198948 29970067 ~ 29974882 (-) True LOC118964857
XM_021606065.2 mRNA downstream 303423 29863198 ~ 29870407 (-) False kmt5ab
XM_021606082.2 mRNA upstream 11078 30189572 ~ 30191815 (-) True LOC110525709
XM_036979817.1 mRNA upstream 21100 30199594 ~ 30209590 (-) True sftpbb
XM_036981740.1 mRNA upstream 132566 30311060 ~ 30324946 (-) True LOC118965020
XM_021606091.2 mRNA upstream 347540 30526034 ~ 30527686 (-) False LOC110525714
XM_021606093.2 mRNA upstream 358772 30537266 ~ 30553741 (-) True LOC110525715
TU561865 other downstream 498257 29675323 ~ 29675573 (-) True G494542
TU561743 other downstream 670439 29502253 ~ 29503391 (-) True LOC110525684
TU561696 other downstream 690484 29478655 ~ 29483346 (-) True LOC110525681
TU561692 other downstream 758516 29411215 ~ 29415314 (-) True G494389
TU559292 other downstream 2338528 27827231 ~ 27835302 (-) False LOC110525655
TU562998 other upstream 348192 30526686 ~ 30527546 (-) True LOC110525714
TU563013 other upstream 366908 30545402 ~ 30549450 (-) True G495554
TU563022 other upstream 396624 30575118 ~ 30575573 (-) True G495560
TU564400 other upstream 1482899 31661393 ~ 31661618 (-) True G496772
TU564405 other upstream 1492484 31670978 ~ 31671927 (-) True G496777

Expression Profile