RNA id: TU563013


Basic Information

Item Value
RNA id TU563013
length 3911
RNA type TUCP
GC content 0.40
exon number 2
gene id G495554
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 30545402 ~ 30549450 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttcaagggggccgaatactttcgcaaggcactgtagctgcctATAGCCTAATTTacatctgtcaaacaggtaggcctacctcttatttcttaaataggaagaaataagctccaacacaaagccctcttgttgttagtaaAGCTTAATTAAAATGAAGACAGTTTAAATGAACTATGCCTACTTTCATGAGCAATCCATTTCTGATTGATTGTGCTGCTTGAAGCTTCAGGACCACAGTTTAAGTTACTCTAATCATTAACTCTGATAAATATATTATGGGCAAGGAAACATATGGACTTTAATAAAATcaataatatactgaacaaaaatataaatgtaaagtgttggtctcatgtttcacaaaagatcccagacattttccatatgcacagaaAGAAGCTTATGCTTATTTCTCtcatgttgtgcacaaatgtgtttacatccctgttagtgagcatttctcctttgccaagataattcatccatctgacaggtgtggaatataaataaactgattaaacagcatgatcgttacacaggtgcaccttgggccggtacaataaaaggtcactctaaaatgtgcagttttatcacacaacacaatgtcacagatgtctgaagttgagggagtgtgcaattggcttgCTGCCTGCAGGAAtgtacaccagagctgttgccagagaattgaatggtAATTTATCTAcgataagccacctccaacgtcaatttagagaatttggcagtatgtccaaccggccccacaactgcagaccacgccagcccaggacctccacatccagcttcttcacctgcggggttgtctgagaccagccacctggacagctgatgaaacgagGAGTATTTATTATTtgtttgtaataaagcccttttgtgcgGTAAAATGTATGATTGGATGGGCCTGACTCCCCAGTAGGTTGGCCTGACTCCCTAGTGGGTGGGCATaagccctcccaggcccacccatggctgggcccctgcccagtcatgtgaaatccatagattaggcccaattgaatttattttaattaactgatttccttacatgaactgtaactcagtaaaatcgttaatTGTTGCTTGtggcattttttatttttgttcagtatagtagtaGCAAGCTATCAATGTTGACCTCCGGACCTCCTTCTCATCTTTGCACTTTCCTTCTCTAACTAAACAGAACATAAGCTAGGGCTAGTCTGCGCAAAGGTGCAATTTTTGGACTAGgcctaataaaaaaaaaaagatttacagAAGAAACctttgactctcctcctgaaTTACCACTGTAGccctacacagcacagccattgatTAAGCAGCACTGAATGTTTTTGATCAGcaaaagcagagcagagcagggcagggctccgtgtaatgcagcctagtttCATTTACACCATACCAGCAGCTCTCTTAGAAATATAACCTGCTCTGTGCTTCTGAGTATGCACTTCGTAGGCTATGCTTTAAATAATTTGATTTAAAGCACACTAAATAGCCTCTAGGCGCACTTAATATTGCACCCAGAGGAGAATCAGAGATTGAGGGGCGGCATCGGCCAcactatttatttatatttatatacacacactactggttaaacgttttagaacacctataCATACAAGtgtgtttctttatttgtactattttctacattgtagaataatagtgaagacaaactatgaaataacacatggaatcatgtagtaaccaaaagtgttaaacaaatcaaaatatatgagtttcttcaaatagtcaccctttgacttgatgacagctttgcacactgcattctctcaaccagcttcacctggaatgcttttccaacagtcttgaaggagttcccaagtgctgagcacttgttggctgcttttccttcacttcgaggtccaaatcatctcaatttggTTAAGTTCGggggattgtagaggccaggtcatctgatgcagcactccatcactctccttggttatacagcctggaggtgtgttgggtcattgtcctgtgaaaaacaaatgctagtcccactaagcccaaaccagatggtgTGCTttgttctaaataaatcagacagtgtcaccagaaaagcacccccacagcataacaaaatacacatgtggagatcatccgttcacccacactgagtctcacaaagacactgcggttggaaccaaaaatctcaaatttggactccagaccaaaggacaaatttcactggtctaatgtccattgcttatgtttcttggcccaaacaagcctcttattggtgtcctttttatGAGTGGTTTCTgtgcagtaatttgaccatgaaggcctgattcacacagtctcctctgaacagttgatgttgagatatgtctgttacctgaactcagaagcatttatttgggctgcaatttctgaggctggtaactctactgaacttgtcctctgcagcaaaggtaactctgggtcttccattcctgtggcggtcctcatgagagccagtttcatcatagcgcttgatggtttttgagattgactgaccttcatgttttaaagtagcggactgtcatttctctttgcttatttgagctgttcttgccataatatggacttggtcttttaccaaatagggctatcttctgtatacccccctaccttgtcacaacacaactgattggctcaaactcattaagaaggatagaaatgggctgatggtgaagtagacatactcggtattcatatcacaaaagatAGAAATAAGCTTTCCACAATGAGTTTTAATAGAAAActtagacaagatcctgcaagcatggagaggtaaatacctgtctataaattgccctgattaactccttagtcatatctgtTTACTCACTGACTTATGGcactgcctactcctgatgatttgtttttcaaatcatatgagcaaaaaatatttcgcTTTCTGGGACACTAAACCAAACAAAGTAAAACctgcctatctatataatgaatatgaattgggttGGGTTGAGATTATTATATATAAAAGCGCTAAACCTCTCAAAGcttcactcattcaaaagttttatttgaaccccaaatggttctcaattagattactaagaaaagctcatccattgtttaaaaatggcctttttTGCAGATTGCCAAGTCTCATTTTCAATGAATTGAAAATTATACGTTGAAAAAcgtatctctctttttcaaacaagcattgcagagctggctaaaATTTAAATTTCacccccctgaaaagatagaacaaatattatggctgatctcatgtgctggttgataaaatacctgtatttatgggaaagatgtttgaaaagggtattttgttcttaaattatattgtaaattggaatggtggagttatgtccttcatggagttatcagaattgtacgggaaggtctgctcaatccaagaatacaaacaattgattacagcattacccccAAAAGAGAGGAgtcaggtggcagcgggaggaggtagggaactggcctgtctgcccaatataaaggatcatgactggaggaggcaggtggcagcgggaggaggtagggaactggcctgtctgcccaatataaaggatcaaaactggcggcggaataaaaatagcataaataggaaagtataccagtttcatttgaggaccaggatgttgacaactgtgccttACAGATTGAAAAACCAagtttcagctaaaattattatatataattcttgccaccaacaaaatgttgaatatttggggataatatcatcgaagctctgcagattttgttgtgagaatacagaatcaatagaccatttattttggtattgccctcaggtagcctgtttctgggttcaggaatggctgaaaatgcatagcattgatccaaaattggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU563005 lncRNA downstream 10805 30534352 ~ 30534597 (-) True G495546
TU563002 lncRNA downstream 14054 30531147 ~ 30531348 (-) True G495543
TU562999 lncRNA downstream 16831 30528274 ~ 30528571 (-) True G495540
TU562964 lncRNA downstream 22021 30522006 ~ 30523381 (-) True G495505
TU562960 lncRNA downstream 26988 30501931 ~ 30518414 (-) True G495502
TU563024 lncRNA upstream 30515 30579965 ~ 30582419 (-) True LOC110525719
TU563040 lncRNA upstream 67563 30617013 ~ 30617233 (-) True G495578
TU563043 lncRNA upstream 77030 30626480 ~ 30626694 (-) True G495581
TU563054 lncRNA upstream 145340 30694790 ~ 30695677 (-) True LOC110525722
TU563099 lncRNA upstream 156848 30706298 ~ 30917821 (-) True G495629
XM_021606091.2 mRNA downstream 17716 30526034 ~ 30527686 (-) False LOC110525714
XM_036981740.1 mRNA downstream 220456 30311060 ~ 30324946 (-) True LOC118965020
XM_036979817.1 mRNA downstream 335812 30199594 ~ 30209590 (-) True sftpbb
XM_021606082.2 mRNA downstream 353587 30189572 ~ 30191815 (-) True LOC110525709
XM_036981739.1 mRNA downstream 437707 30105365 ~ 30107695 (-) False LOC110525706
XM_021606099.2 mRNA upstream 11971 30561421 ~ 30579113 (-) False si:ch211-102c2.8
XM_036979850.1 mRNA upstream 12168 30561618 ~ 30579045 (-) False si:ch211-102c2.8
XM_036979847.1 mRNA upstream 12168 30561618 ~ 30579112 (-) False si:ch211-102c2.8
XM_036979851.1 mRNA upstream 12168 30561618 ~ 30579112 (-) False si:ch211-102c2.8
XM_036979846.1 mRNA upstream 12168 30561618 ~ 30579113 (-) False si:ch211-102c2.8
TU562998 other downstream 17856 30526686 ~ 30527546 (-) True LOC110525714
TU561865 other downstream 869829 29675323 ~ 29675573 (-) True G494542
TU561743 other downstream 1042011 29502253 ~ 29503391 (-) True LOC110525684
TU561696 other downstream 1062056 29478655 ~ 29483346 (-) True LOC110525681
TU561692 other downstream 1130088 29411215 ~ 29415314 (-) True G494389
TU563022 other upstream 25668 30575118 ~ 30575573 (-) True G495560
TU564400 other upstream 1111943 31661393 ~ 31661618 (-) True G496772
TU564405 other upstream 1121528 31670978 ~ 31671927 (-) True G496777
TU564492 other upstream 1294013 31843463 ~ 31892649 (-) True G496851
TU565305 other upstream 2130592 32680042 ~ 32682847 (-) True LOC110525784

Expression Profile