RNA id: TU564405


Basic Information

Item Value
RNA id TU564405
length 950
RNA type TUCP
GC content 0.44
exon number 1
gene id G496777
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31670978 ~ 31671927 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTCCCAGTACAATTTCCTACCTCTATATTGTCATTTGTGGAACTCCAGCCCCATTTAAAGTTTTCCCGTCTCACATCACATTCAATGACAGCCAGTACGagcaaaacataaaaaataaaacattaaaacccAGTTAAAACCCACTTCCTTATCTCAAGATTGTTCACACAACAGAGCAGTAAATATACATGCTAACCCTGAGCTTACTGTTGTACTGTATACctaatacattacattacttttGTAATCATTTCACTTCTGAAATGAAACCCATCACCCCTTAGTTTATTCTCTGACACGGAGGGGTCTGTGCGTGTAGGTTTAATATAAGGGGTATATTTAAATTTTAGTcagttagcagacgctcttatccagagcgacttacagttagtgcattcatcttaagatagctaggtgggacaatcacatatcacaggcatagaatGTACATTTTTTCTCAAGTAAATAAATCAGTAGTCAGAGCTAGAACGGGAGGTGGCAGAATGGAGTtctcaggttggggtgtaggatttgagcatagcctgaaggtcgggaggggcagttcctcttgctgttccataggtaagcaccatggtcttgaaGTGGATTTGAGCTTTGagtggaagccagtggagtgtacGAAGGACTGGGGTGACAatagagaacttgggaaggttgaaaaccaggtgCGCTGCagtgttctggataagttgcaggggtttgatggcacaagcggggttTTCAACCTAGAACCAAGCCCTGGGgaacaccagtagtgagagtacgtggtgcagacacagatcctctccacgtcacctggtaggagcggcctgccaggtaggatgcaatccaagaatGTGTatagacgcccagccctgagagggttgAGAGGAGGATATGATGGTTCAGTGTCAaaggcagcggatagatctaggaggatgagaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU564404 lncRNA downstream 1342 31669254 ~ 31669636 (-) True G496776
TU564403 lncRNA downstream 2621 31668033 ~ 31668357 (-) True G496775
TU564399 lncRNA downstream 11031 31659480 ~ 31659947 (-) True G496771
TU564262 lncRNA downstream 245812 31424921 ~ 31425166 (-) True G496652
TU564260 lncRNA downstream 247072 31423689 ~ 31423906 (-) True G496650
TU564417 lncRNA upstream 32737 31704664 ~ 31705045 (-) True G496789
TU564429 lncRNA upstream 87220 31759147 ~ 31759455 (-) True G496801
TU564565 lncRNA upstream 322531 31994458 ~ 31994683 (-) True G496919
TU564566 lncRNA upstream 323349 31995276 ~ 31995499 (-) True G496920
TU564588 lncRNA upstream 352001 32023928 ~ 32024730 (-) True G496932
XM_021606156.2 mRNA downstream 14679 31652136 ~ 31656299 (-) False gatc
XM_021606155.2 mRNA downstream 14679 31654447 ~ 31656299 (-) True gatc
XM_021606154.2 mRNA downstream 14680 31654447 ~ 31656298 (-) False gatc
XM_036979883.1 mRNA downstream 29427 31640221 ~ 31641551 (-) True LOC118936268
NM_001124609.1 mRNA downstream 35142 31634776 ~ 31635836 (-) True ublp
XM_021606175.2 mRNA upstream 63927 31735854 ~ 31751785 (-) False LOC110525757
XM_021606171.2 mRNA upstream 63927 31735854 ~ 31752306 (-) False LOC110525757
XM_021606172.2 mRNA upstream 63927 31735854 ~ 31752311 (-) False LOC110525757
XM_036979891.1 mRNA upstream 63927 31735854 ~ 31758189 (-) False LOC110525757
XM_036979890.1 mRNA upstream 63927 31735854 ~ 31758192 (-) False LOC110525757
TU564400 other downstream 9360 31661393 ~ 31661618 (-) True G496772
TU563022 other downstream 1095405 30575118 ~ 30575573 (-) True G495560
TU563013 other downstream 1121528 30545402 ~ 30549450 (-) True G495554
TU562998 other downstream 1143432 30526686 ~ 30527546 (-) True LOC110525714
TU561865 other downstream 1995405 29675323 ~ 29675573 (-) True G494542
TU564492 other upstream 171536 31843463 ~ 31892649 (-) True G496851
TU565305 other upstream 1008115 32680042 ~ 32682847 (-) True LOC110525784
TU566350 other upstream 1655580 33327507 ~ 33330504 (-) True G498484
TU566347 other upstream 1660723 33332650 ~ 33336780 (-) True LOC110525812
TU566881 other upstream 2368432 34040359 ~ 34041174 (-) True G498960

Expression Profile