RNA id: XM_036983364.1


Basic Information

Item Value
RNA id XM_036983364.1
length 4690
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC110527878
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 46341988 ~ 46374962 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggcaaatatattgataaaagtcaccttgtcctagagagatttacacagttatcaaaatgtcacgccagAGTAAGCATACTCAAAACACAGCCGTTAttgtaagtgtttctaaaatcccctatgagaAAATTGTATGGTgggaaaacgattggaaccatttccttgtttgactcctaggttttatgggtattatgacacatactgtggtactctatggaATGGCATGGATTTTAGTAAAGTATCATTTgttttgctctgagaccaggttgctctGCATCACAGGTGTTGGCTCCAGGTATGACCCCTGCAGTTTTAACTAAATGACTGCCCCAGAATAATGGGCCAGCTTTGTTAAAATCGAATGGTCAGTTGTGAGCTTAACATTTCTGGTAGTGGATTTTAGGGAGGAATTTTGGTACGATTTGAGAATGTAAAGATTTTTCTAACAATTTTAGTAACACACTTGTCTATACCAAAAATGTATAAATGAATAGCTCTATAAATGAGCTAATAACTGTTTGAGTTTTTTTGCATTGTGGAAATCCCAGTTGGCACTCTGCTCATAGCTTGTACATGTAGAGACGGACCAAAAGCTGTCAAAACAAATGATCTTCCTGTACAAGGGTGTGAGGATGAGATAATATTCTCGGTTGATAGGGATCTCAACtgatttatatacagtacagttagcCCTTGTGTTAGATACAACTACTTACAGTGTCTTTTATTTTTTCATATTTGACATGGTTTTGGAAACATGAATGGGCACGTGTCTTCTGAAAGCCAGAAACTTTTCTAAGCAGGGTTGAACTTTATTGGCATACAGGTCTAATGGTCTAGATCAACTATTAAACTGTATTGACATATATTCATCTTCCTAATTAAACAGTAATATTTGTTTCTGATAATGTCATATTCCTAAGGTGTCAAACCAGCAGTGATTCTACTTTTGTGCCATGCCTGTGATCAATTTTAAGCTGGATTTGTGATCCCCTATTCTTTTTAACCCTAGTCAAGCTGCAGACTAACTAGGAACGGGCTATGACTTAGTAGACTAGTGGATCCTGGCACACCATTTGGGAACCACTGGGAGACTAGGTTTAACACGCAACACCAATCCGAAAGTTGGTAGTGGGATGGTCTGTTCTAAAAATCCTGCTACATTTTTGGATTAATCTTTTTGTTACGCAATGTTTGTAATGGAACAGTGGTGTCAATTGTATTCCGGGTTCTCagaaaaaataatgttttatacTAGATGAGCGGAACTAAAGATGAAACGTTAGTTAGCCGGGAGCGAGTTTCAATTTGGAAACTAGTAACCCACTAGCAGAAAGAGTCCTTTGTGAGACGGAGATGTTGACGTCAAATGAACGCTGTGAAGACATAAATTCGTAGTTTAGCTAGAACAACACAACATAGAGAGGATGAGCCCTAGtaccctccccctgtctccaaACTTGTATAACTAATTAGGGGTTTGCCTTTAATAAGTTAAACTGATAAAGCCTGTCCTCTTGTTTGCACATGGTAGCCTTGTATTCTCACAGTTGACTGTCCAGACAAAAGGGATATCTGATACATACTATCATACAAATTACAATATGTTGGAGATGCTTGAATACAGCCATTACCAGGTGAGTTTTACCATTACCAActgtttttgggggggtttggtTTTCTATCAGTATGCAGTATTGCTATGAGTGTTAGTGTCACTTGTATTAGTATAATGTCATATTTATGTATGTACTATATTTGTACAAACATAAATAAATGCATTGTATTCATGACATTGTCCTCGGTGCACTGTATAATTCACTGTCATTGAGTAGAAGAAAGAAAGGGGCGTATAATTAGAGGCTGTGATTGAAAAGGTTTGGTTTATTGTTCATGATTGTACAATCCATGTGTTGCTCTTCAGACATGCATTCAAGTCTGAAGATCAATCCACAGAATCTCACAGATCTTAATTGTGAGACATTTTACAAAGAGCAAAGCCACATTTCACTGGATAACTATATGTTTCCATAGGATGAGATGGTCTAACCCCAGGAACCTCATTACCGACACTGAACAAAACTAACTTTGGAAACATTTTCCGCCGTCTTCAAACGTCTCTCATTTCCCCCCACCAAGGTGCAGAGCCATCTGGAGAACCCCACCAAGTATCACATCCAGCAGGCCCAAAGGCAGCAGGTGAGGCAGTACCTGTCCACCACCCTCGGGGGTAAGCCTGGCAGCCAGGCCAGCAGTCTGCAGTGCCACAGCCAACCCCCAGAGCACGGGATGCCCCCCGGCCCAGGCAGCACTGCCCCCAACAGCCCCATGGCCCTGCTGACCCTCACCTCAAACTGTGAGAAGGAGatggacgatgtcatcgatgacATTATTAGCTTGGAAACCAGTTATAATGATGATATTCTTGGCTTTATGGACCCCGGACTCCAGATTACAAATACTCTCCCTGTATCTGGTAACCTTCTGGACATGTATGGAAACCACGGACTTACCAGCAGTAACGCCTGCCCTGGTAGTTTATCCAACATAAAAAGGGAATTCTCAGCTCCTGGCATGATGAACATACTTGACAAGACTGCATCCTGTGGCCAGTTTGACAACTACCAAAGGCCCGAGGGCTTTCCAGTTGCTGAGGTCCGAGCGATGGCCAAGGAGAGACAAAAAAAGGACAACCACAACTTAATTGAACGAAGGAGGAGGTTCAACATCAACGATCGAATCAAAGAGCTTGGAACCTTGATTCCTAAGTCAAATGATCCGGACATGCGCTGGAATAAGGGCACCATTCTGAAGGCCTCGGTGGACTACATCAGGAAGCTGCAGAGGGAGCAGCAGAGAGCCAAGGAGCTGGAGCTTAGACAGAGGAGGCTGGAGCATGCCAACCGCCATCTGATGCTCCGCATACAGgagTTGGAGATGCAGGCGCGGGCTCATGGTCTTGCGGTTGTGCCGTCCCCTTCCCTCTGCTCCTCTGAGCTGATGGCCCGAGCCATCAAGCAGGAGCCCATCCTAGGAGACTGTCCGTCAGACCTGTACCAGAAGTCGGGCCCCGACATGTCCCCTACCACCACACTAGACCTCAACAACGGCACCATCCACTTCAATGACAGCCCTTTGGATGCAGGGGAACCAGGGGCCTATGGCTCCAACAAGGCCTCCACTAAACTGAAGGACATAATAGACAACACCCTGTCACCCATATCATCCCTTCTGTCCTCCGTGTCTCCAGACGCctccaacagcagcagcaggcgtAGCAGCAGCTCAAGCATGGAGGAGAATAATCCTGGTTGTTAGCACTGCCCACGAGCTCAAGTCACACTCACATTTTAGCATATTGTTATTACTGTGATTGTTATTACTAGGTTCTGCTATTGATCTATTCCATGAGACACTTCTGTGCTGGCATCCTAAGATGTCCTCCAGCTTTCCTTCCCTCGTCTACAGACATTCTGTATTTTGCTTTTGTTTGTTTTGCAATATCATTGTGTCTCTGTCTGGAACCAAATCGGACGGTTCAGATTAGTCTACTCTGCTCCTTAGCTGGCTGCTGAGATTTACTGTACAATAAGATGAACTTTTCATGGGTGAATTATTTGAGAGAAAGTGCACAATAACATGACAAGATTTGATATTTTTCTCATGTCATGACTATTTGTCAAATTAgtttaaaacatttgtttatGACAGTATATGATATCatacagaaatatatatttaGTTGAATACTTTGTTCATTAACTGATAATAACATTGTACTAAGCATTTAAGATGAGCTAATACCTCTTACCCTTAAATTAAATTCAGAAGCAATGGTTTGAAAGCCACAATTTTATTTTTGCGAATAAGAAACAACTTGCAGGAACAATGAATGCCCTTTTAATGACTTTTTTCCCCTACATGGTGATAGCTAAAGTGAAGATATTTGTACAAAACGACACTGTAAATATAAACATTTTGTGATTTTTTTGGGAGTTTGTTTTTTTATTGAGTAGGTCTTTAATTAAGTATTAAATTAAGTGAatcgatttttatttttattccccTGGCTATTAACATATAATTTACATCTGTGCTCTTATCCCATACAAAGTTGTAATGCACATGAAGATAATATTTTGAAGAGTTCAAACAGTTATTTAGCTCAGAAGGAGCACCTGCCAGCATTGTTCTTGTATGTGAAGTACTGAAATACTATCCCTAATATTACTTTATAATTACTAATATTATTTCCTTAAATAACTTTCTATAAGATGGTTGACTGTAGGAGCTAGCCCATTTATAAAATAATGTAGTTGATGTAACCAACACATTCCCCTATTTCATGTCTTCTGAGCCACTTATCTGACCTAACCTGAATATGAATGTTATTATTTATTGTGTTGTGCCACTCAGTCCTCGACTTGCGCTAATCATGTGGTTGCTGGACCCGTGTACGAGGGTCAGAGGTATGAAGTGATTTTTTTGTACTGTCTATCATTGTGTTATCTTCGGTGGCAGGTAAGCTGAAAACATTATACAATTTAGTATCAGTGGAGCTCTGGAACAAGTGCCTTTCATTTCAGAAAAGTTAGGGGGAGTTAAAAAATGCATTTAATGAGCCTCAATATACATATTTTGTGCAATATTAAAGCGCATTGTGCTTTAAAAATGTGTTTGTAATGATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU698803 lncRNA downstream 55715 46282513 ~ 46286273 (-) False G613935
TU698802 lncRNA downstream 59892 46281884 ~ 46282096 (-) True G613934
TU698800 lncRNA downstream 62832 46278721 ~ 46279156 (-) True G613932
TU698781 lncRNA downstream 88114 46253479 ~ 46253874 (-) True G613913
TU698779 lncRNA downstream 91838 46249913 ~ 46250150 (-) True G613911
TU698900 lncRNA upstream 33789 46381932 ~ 46382225 (-) True G614020
TU699036 lncRNA upstream 82124 46430267 ~ 46430496 (-) True G614156
TU699040 lncRNA upstream 91380 46439523 ~ 46439754 (-) True G614160
TU699042 lncRNA upstream 93025 46441168 ~ 46441439 (-) True G614162
TU699045 lncRNA upstream 102299 46450442 ~ 46451846 (-) True G614165
LOC110528957 mRNA downstream 8361 46317529 ~ 46333627 (-) True LOC110528957
XM_036983346.1 mRNA downstream 369976 45969430 ~ 45972012 (-) True gpr27
XM_021609453.2 mRNA downstream 591151 45735778 ~ 45750837 (-) True LOC110527871
XM_021609451.2 mRNA downstream 591153 45734357 ~ 45750835 (-) False LOC110527871
XM_021609452.2 mRNA downstream 591154 45734357 ~ 45750834 (-) False LOC110527871
NM_001165143.1 mRNA upstream 108872 46457015 ~ 46460324 (-) True praf3
XM_021609476.2 mRNA upstream 697175 47045318 ~ 47141529 (-) False LOC110527887
XM_021609477.2 mRNA upstream 697175 47045318 ~ 47141560 (-) True LOC110527887
XM_021611125.1 mRNA upstream 796762 47144905 ~ 47146014 (-) True LOC110528959
XM_021609478.2 mRNA upstream 912182 47260325 ~ 47282372 (-) False LOC110527888
TU698246 other downstream 466288 45874965 ~ 45875700 (-) True G613411
TU696391 other downstream 1856236 44484855 ~ 44485752 (-) False G611674
TU696390 other downstream 1856583 44484855 ~ 44485405 (-) False G611674
TU695139 other downstream 2762024 43579093 ~ 43579964 (-) True G610570
TU695154 other downstream 2805023 43526691 ~ 43536965 (-) True LOC110527816
TU700211 other upstream 920180 47268323 ~ 47270071 (-) True LOC110527888
TU701964 other upstream 2138904 48487047 ~ 48529168 (-) True G616880
TU702802 other upstream 2836281 49184424 ~ 49185455 (-) False G617624
TU702803 other upstream 2836281 49184424 ~ 49186096 (-) True G617624
TU702811 other upstream 2847461 49195604 ~ 49195970 (-) True G617632

Expression Profile