RNA id: XM_021609712.2


Basic Information

Item Value
RNA id XM_021609712.2
length 2914
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110527991
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53624264 ~ 53636278 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTGATTCAGGTGTAGAGTCAATGAAGTGACAGTCAACTAATGGATGAGCACAAACATCTGCAGAAAGCATTCGCATACAGCCTGCAGAAATGTAGGAGGTTTGGAGTCATGCCTATACGTCGTGCAGCTAGGACACCACCCCAGGAGATGCCCCCCTCGGCTGCACCAGAGGGAGaGCCTGATGCCAGTTCTGAGGAGTCTGCCTCtgttgaggaggagcaggagatgGCATCCGCTGCCCTAGTAGCCAAGGAGGGGGAGGGCACAGGTGAAGGAGAGACCAAAGAGAATGGTGAGAAACCTGAGGGAGAGAAAGGTGATGAATCGACTGGAGAGAAGACTGCTGAGGGGGAAGAGTCTGAGAAGAAAGAAGAGAAGGATGGCGTGAAAGAGAAAGTGAAGAAGCCAGTGAAAAGGGCCATTCCCGCCTGGGCAACCATGTCTGCCAGCAAACGTGCAACTCTCACTAATAAGAGCACCTCCACCATGCAGCTGCCTAAGATGGACGACATCCTCATCGAGGCCATTGAGTCCTGCAAGGAGAAGACTGGGGCCTCAGCCCATTCTGTCATGAAGTACATTGTGAAGAAATACCCTAACCTAGAGAAGAGGAAATTCCTCCTTAAGAAGGCTCTCAAGAGGCAGCTGGAGAAGGGCACCGTCAAACAGCTAAAAGGTAAAGGCCTTTCTGGGAGCTTTACCATTGGGAAGCAGTCCTCTAATAAACCAACTGCTAAAGGGCCGATCGTCGTGGCACCTGGGTTGAAGGCAGAGACCCTTGGGGATGCTCTGCCCCTGATCATCACACGGCTATGTGAGCCCAAAGAGGCGTCTTATATCCTGATCAAGAAATATGTGGAGCAGCACTTCCCTCAACTCAACGTGGAGCATAGGCCAGATATCCTAAAGAGTGCCCTGGTGAGAGCTGTGGACAAGGGTCACCTGGAGCAGATCACTGGAAAAGGAGCCTCTGGAACATTTCAGCTGAAGCGGGAAGGGGGCAAGTTCCTGCTTAAAGGCGGGCCCCTGGAGGACGCTATCATGACATCCATTGTGGCAATGAACGAACCCAAGACTTGCAGCACCACCACACTCCGCAAATTCCTGTTAGAGACAAACCAGGACAGCATGGAGTACCGTGTGGTGAACAACCTGAAGAGGACCCTGCAGAAGTGCAAAATGATGGGCTGGATGGATCAGATCACTGGGAATGGGCTAAACGGAACCTACCAGCTCTGCTACCCTTACTACCCCAGCCCAGCCATTCTGTTCCCTGAAAAACAGAACGTGAAGGAGCAGAAAGTGGCGGAGAAGGACAAACGCAGAAAGAGGGTTGACTTGTCTGATGAGGACtctgatgaggaggaagaggactcgTCCGAGGAAGAGGACTCAGATGATGAACCCCCTCCTAAGAGGAAAGCTGGGAAGAGGCCACCACCTAAAGCGCGTCGTCCCCCCCCCAGCAAGAAGTCTCGGCCGGCAAGTCAGTCAAGGGCTAAGGGCAAAAAAAGAGCTGCCCCAGCAAAGAGGTCTGCGCCCCCAGCAAAGAGGTCTGCGCCCCCAGCAAAGAGGTCTGCGCCCCCAGCAAAGAGGTCTGCGCCCCCAGCAAAGAGGTCTGCGCCCCCACCAGTCAAGGTATCCCCACCAGTCAAGGCACCCCCACCAGTCAAGAAAGCTGCACCTGCGAGCAAGCCCAAAACGCCCATCATCAAAAAGCTGATGAGCAAGGCATCTAAGCGGCCAACGCCCAAAAAGTCACCTCCTGCAAAGAAGGCAGCAGCCAATTCTGCAGTGAAGGCCAAGCCAGCAGCTCGCAAGTCCCTGAGGGGGAAGAAGTGAGTTTCCTATTGCCCAGCAGTGGAAGTTTAACTGTAGCTCTGAAGACAGTGgtgctctgcctctctccatgCTCTCTTTCGCATCATTGTTTTCCTCCAGTTTGGGGCTATAGAATTATTTTCTCTGTAGGATTGGGATGTGGCAGTTATTAGTTCATGTCAATTTACTGTACTTGGGAACTGTTCTATTTCTGTGAACCCAAGTTTTAATCTCCATTGTGTAGAATGGCCTCTTAAAATATGTAAAACTGCCTAGGTAAAGAATTGTGAAATTTCCATCACACTTAATTTTGATAATGTATAGGCAGAGATCCAGAATCAGTGACTTTTGCATTTTGTCCCAGTCCACTCTACCATGTTTTACCTGGACACATTCCTTTTATCAAATCATTTGTTTAGCATTTTGGAAACTTTCTTCCTCTACAACATTTTTGATTTCTCTACATTTAATCTGGAGTGAACTCATCTTAAAGGATATTGAGATTTGTGTTAAGTGAATTTGAGAGCATAATGACAGCCAACTTTTCATGTAATGAATTATTGTTTATTACGAATTCTGTTATTTAAATGATCGTATGAGTGAAACATATCCATCGCTGGGCCTGTGGTTAAAATAGTTAATATGATTGGAGACTAACTGATCAGGAAGCACTGTTTGTCATTGTGATTTTCAGTACTACTGCATAGTATTAggggattttttttgtgtgtgtaaacAAACAAGCTAATCAAAGTGAATTGGTTGTGTCCTATAAAGCGAAAAGAAAACAGACCAATACAATCTTCTACATTCTGTGTAATAGTGAAAGATTGTGAATAACACACTTTGTTTTGAAGGAGCGTAGCTCATACCCTGCATGCATGCGTGTACTCTTTATTGTATGCTTTTTCCCAAGTCATTATTAAAATGGCTATATTTGTACTTCCTTCATTCTGTCATGGTCTCAAGGGAGACAAACACGAAATAGTGTGTCTGCTGGTGGAGCTgaagtatatattttaaatactACACAATACAAATCCATAATGTCAATTTGGTTCACTCATGAATAAAGTGCTGGATAGTTTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU708762 lncRNA downstream 32861 53590164 ~ 53591403 (-) True kif17
TU708641 lncRNA downstream 211076 53412930 ~ 53413188 (-) True G623018
TU708636 lncRNA downstream 212521 53406030 ~ 53411743 (-) True G623013
TU708580 lncRNA downstream 250883 53368443 ~ 53373381 (-) True LOC118965299
TU708611 lncRNA downstream 304558 53317862 ~ 53319706 (-) True G622991
TU708817 lncRNA upstream 98770 53735048 ~ 53737808 (-) False G623173
TU708815 lncRNA upstream 99986 53736264 ~ 53737808 (-) True G623173
TU708821 lncRNA upstream 105076 53741354 ~ 53748563 (-) True G623176
TU708822 lncRNA upstream 114631 53750909 ~ 53751186 (-) True G623177
TU708823 lncRNA upstream 115393 53751671 ~ 53751956 (-) True G623178
XM_021609727.2 mRNA downstream 358 53613567 ~ 53623906 (-) False LOC110527994
XM_036983530.1 mRNA downstream 358 53613569 ~ 53623906 (-) False LOC110527994
XM_036983529.1 mRNA downstream 359 53613569 ~ 53623905 (-) False LOC110527994
XM_021609724.2 mRNA downstream 360 53613570 ~ 53623904 (-) True LOC110527994
XM_021609705.2 mRNA downstream 22111 53589838 ~ 53602153 (-) False kif17
XM_021609730.2 mRNA upstream 505 53636783 ~ 53703957 (-) False LOC110527996
XM_021609731.2 mRNA upstream 505 53636783 ~ 53703957 (-) False LOC110527996
XM_021609732.2 mRNA upstream 505 53636783 ~ 53703957 (-) False LOC110527996
XM_021609733.2 mRNA upstream 505 53636783 ~ 53703957 (-) False LOC110527996
XM_021609734.2 mRNA upstream 505 53636783 ~ 53703957 (-) False LOC110527996
TU708601 other downstream 301433 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 2665724 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 3318108 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 3687983 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 4327016 49295255 ~ 49297248 (-) True mustn1b
TU711185 other upstream 1436201 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 1528214 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 1797178 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 3055045 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 3198307 56834585 ~ 56835092 (-) True G627314

Expression Profile