RNA id: TCONS_00034217


Basic Information

Item Value
RNA id TCONS_00034217
length 270
RNA type scaRNA
GC content 0.49
exon number 1
gene id XLOC_017166
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 10489458 ~ 10490064 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTGCAGTCTCGCGGTCCGGTCTCCTGTTTGTCCAGTGACTCGAGACTCTGCGAAGCTGCACAGATCAGACTGAAGGATCCAAAGGCGTTACTTCTCCAGACTGAAGTTTTACGTGCGATATTCTTTCGACAGATCTTAACCTGTTTCCACGGCGGTAATGGTTGTGTTGTACCGTTACCAATCTAAAAACAGGCAGAGTAAAACAGCGGCAGTCAGATATTGTCTGGCAGGAGGAGCGCGCCTTTCAGACACTTCGAATTGCCACAGTT

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043049 otic placode formation biological_process
GO:0006413 translational initiation biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0010467 gene expression biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000119138

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036547 lncRNA upstream 264548 10221415 ~ 10225073 (+) True XLOC_017165
TCONS_00036546 lncRNA upstream 420863 10067935 ~ 10068758 (+) True XLOC_017163
TCONS_00036545 lncRNA upstream 535639 9951564 ~ 9953982 (+) True XLOC_017162
TCONS_00034211 lncRNA upstream 688079 9797088 ~ 9801542 (+) True XLOC_017160
TCONS_00034209 lncRNA upstream 697900 9782940 ~ 9791721 (+) False XLOC_017160
TCONS_00036549 lncRNA downstream 579726 11069616 ~ 11071165 (+) True XLOC_017171
TCONS_00036551 lncRNA downstream 1153192 11643082 ~ 11644348 (+) False XLOC_017172
TCONS_00036550 lncRNA downstream 1153192 11643082 ~ 11644348 (+) True XLOC_017172
TCONS_00036552 lncRNA downstream 1240429 11730319 ~ 11732054 (+) False XLOC_017173
TCONS_00036373 lncRNA downstream 1421662 11911552 ~ 11916287 (+) False XLOC_017175
TCONS_00034215 mRNA upstream 269341 10166297 ~ 10220280 (+) True XLOC_017164
TCONS_00034212 mRNA upstream 640668 9828769 ~ 9848953 (+) False XLOC_017161
TCONS_00034214 mRNA upstream 641328 9828967 ~ 9848293 (+) True XLOC_017161
TCONS_00034213 mRNA upstream 642748 9828877 ~ 9846873 (+) False XLOC_017161
TCONS_00034208 mRNA upstream 665811 9781932 ~ 9823810 (+) False XLOC_017160
TCONS_00034218 mRNA downstream 8814 10498704 ~ 10520821 (+) False XLOC_017167
TCONS_00034219 mRNA downstream 9096 10498986 ~ 10520126 (+) True XLOC_017167
TCONS_00034220 mRNA downstream 48135 10538025 ~ 10541197 (+) False XLOC_017168
TCONS_00034221 mRNA downstream 49403 10539293 ~ 10540960 (+) True XLOC_017168
TCONS_00034222 mRNA downstream 54210 10544100 ~ 10547411 (+) False XLOC_017169
TCONS_00034207 other upstream 720872 9763367 ~ 9768749 (+) True XLOC_017159
TCONS_00034205 other upstream 767483 9720121 ~ 9722138 (+) True XLOC_017158
TCONS_00034201 other upstream 1131491 9355970 ~ 9358130 (+) True XLOC_017155
TCONS_00034199 other upstream 1190072 9299434 ~ 9299549 (+) True XLOC_017154
TCONS_00034188 other upstream 1493640 8993860 ~ 8995981 (+) True XLOC_017146
TCONS_00034225 other downstream 233837 10723727 ~ 10729279 (+) False XLOC_017170
TCONS_00034232 other downstream 2108747 12598637 ~ 12605833 (+) True XLOC_017178
TCONS_00034240 other downstream 2685911 13175801 ~ 13309410 (+) False XLOC_017186
TCONS_00034241 other downstream 2745054 13234944 ~ 13236118 (+) True XLOC_017186
TCONS_00034272 other downstream 4478247 14968137 ~ 15001305 (+) False XLOC_017205

Expression Profile

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