RNA id: XM_021612268.2


Basic Information

Item Value
RNA id XM_021612268.2
length 4265
RNA type mRNA
GC content 0.53
exon number 24
gene id LOC110529761
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 29890555 ~ 29938331 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTTGTTGTCTTCCTGTTCTTGGCGGCCAGTTCAAGTTGCCATAGCAGAGAGAAACTGGCTTGTCCCTCTTCAGTTGTCACTTGCTAAAGTGACTTGTTAACGGTTTCTATGTTGCTAATTCATGCTGgctACTCCTGACCAAAACAATGGAATCCTCCAGCGAGTCAGACACCTTCGACCGGACGAGGGGGCTGAGGTCACGGGGGCGGAATGCCAGTTCTCGATCGCGACGGGCCATTTCAGAGAAAATTAACACCTTGGCGAGTACTTTACAGGACACTAATAGGAATTTGAACAAAGTGGACCGGATGCTGGGGCAATACAGAGAGCACACAGATGACCAGGCGGAAGCCATGGCAACAtTGAGGGATAATCTGGAGGAGTCTATCGCTCAGCTGCAGAACCAGAGGCTGCATAGTTCCTCAGGGGTCCGGAGTGCCTCAGCCTCCACCCTGCACACCAGCGACCTGGAAGCTGGCTATGGCTCAGAGGGCCAGCGCTTCTACCCCACGTCTCCCTTGAAGGACTATGGGAGATCTGAGTCGTCCGGAGAAGGAGGAGCGAGAAGGAGGTCGAGATCAGCTACAGTCCGCTTCAGAGACTCCAGCCTGCCAGATGGGGATGTCCACGTCCTGCACCAGTCATTCAGAGACCTGCGCAGTGACCAGCTCAGACTGGGGGACGACATGGACAGAGAAATACTCAGGAGGAACAGGTCTGACATTGACACCAGACGAGCCTTGGAGAATCTGTCCGAGCACCTGACGACTTCACAGAGACAGGACTCGGTGTCGTCTCGTGTGGAGAAGCGTCTGCAGGAGATTGAGAGGGAGATGCGTTCAGAGCGACAGAGCGTGTCAGACAGACGACCAGAACAGCGGGGTATCATGTCTGATGAACTGCGGGAGGCTCTGAGGAGGCGAGAGGCTCGGGACCTGGAAACTGAAGAGGCCGTCAAGAACAAACTACTGAGATCAGAGAGCGAGAAgaccaagATGGAGGCGGAACTGGAGAGGGCCAGGAGACAGCTGGACCAATCAGAAGGAGGCAGGGGCGCTCTTCTACAACAGGTAGAGGAGATGCGTGTGCAGCTGCTGAGGACAGAGAAGGAACGTATGGATCTGCAGAGGGAGATCTCCCAGCTTACTACCCAGCCCAGAGCTACTCGcatggacagggaggagagaggagcagACCGGTCGtcggagctggagagagaggtgcAGGAGCTGAGAGCCCAGCTGAGCAGGACATCTGTCCTCAGTGAGGTGGACGATCTCAGGAGGACTCTGGAGCTCAAAGACCGAGAGAGAACACAGCTGTGCAACCAGGTCGAGGTGTTGTCGTCAGACCTGGCGAGGCGCGAGCAGCAACAGTTGAGGATGCTGGAGCAGTTGAAGGAGATCCAGGGCCGCTCGGAGGCGTGTGCTACCGAGAGGGCCCGGGCCCTGCTCAGGGCTGAGGAGGCTGAGGCCCGGCTCCAGGACAGCTCCACGAGGAGGGAGGAGCTGAAGACCAGAGCCCAGGAGGCAGTCAGACAGTGGAGGGCCAAGTGCaagaggatggagagggacaTGGAGGAAATGAGGGGACAGGCCCAGCTGGATACGGAGAAAGCCAAACAGgCGTGTAAGGAGAGAGAGCTGTCCCAGGCCCAGCTGAAAGCCTTCTCCCAGCAGACTGAAGGGGTGCGCAGGGAGCTAGCGGAGGTGCTGGGGCGTCTGGCTCGGAGCGAGGAAGAGGTGCTCCGTAAAGACGTGGAGCTGTCGGAGACTCGGGCACGTCACCTGGGCCTAGAGCAGGAagtgagggaggtgagggaggccTCCATAGCCCTGGAGGAGGAGGCCCAGCGGCAGTCTGTCCTGCAGGTTAGGCTGAGAGAAGAGAACCAGAGTCTGGAGGAGAGGGCTGAGGCCGTGGCCCGACGCAGCCAGAGAGACCAGGAGGAGTTACATAGCCTCCAGGCAGCCATGAAGGAGTTAACCTCCGCCCGTGCCCAGCTCACCACCCGTCTAGCTGAGGAGGCGGCGCTCAGGACGGAGCTCCAGAGGAGTGGGGCGGAGGGGGCAGTGCGGCTGGCCGCAGCCCAGGAGCTGAGGGCTTCCCTGGGGCAGCAGCTGGAGCTGGAGAGGGAGGTGCACCAGAGGGAGCTGGCCAGTCTCAGAGCCACTGTGCAGAACGGCAGGACCAAGCAGGATAGAGACATACAGGAGACACTACGACTCTGTATGAAAGAGAGGAATGAGATGGAGCATCACCTCAAGGAGATCAAGGCGGATGCCGCGTCGGACAAGGAGCTGGTGAGGGCTCTGCGTGTGAAGCTGGACAGGATGAAGACTGAGTGTGACCGGATGACAGAGGAGCTGAGCGAAGGAGAGGAGCAACGCTCACACCTCCGCAGAAAATACCAGCTACTCAAGCAGGAGCTGGACGACAAGGTGAAGTGCATGGTTCAGGGAGAGGAACGGAGGCGTGGGTCAGAGGAGGCTGTAGCGGCACTAGAGGACAGACTGTCTCGTCTGGACACTGAACAGGAGTCCATCCTCAGTTCTGTAGCAGAGGAGATAGATGCTGCCTGCAGAGCACTGTTCAAGGACTCCCAGGACAAACTTAAAGCCATATCCCTCAATCCTGGACTCCAGAAAGACCCTCATCGCTGGTTGGCTGAGACTAAGACCAAGCTGCGTTGGCTATGTGAGGAGGTGTCTGTCCAtgaggccagagagagaaagcTGCGACGGCAGGTCCAGCAGGACAGAGAACAGCTGAAAGGACTGAGACAGAGCAGAGACTCTGAAAGACAGGCCCTGCTACAGAGACTGGACCAGCAGGAGAAACTACTGCACTCCATCAGCACAGAGAAGAAAGAACTCCTGGAGAAGACTCGGAGGAAGGAAAATGAGATGAGAAGTCTTCAGGATCGTATCTTGGATCTGGAGATGAGCACCAGGCTGGCGGTGGATCACCTGGAGTCAGTCCCTGAGAAGCTGTGTCTCCTGGACAACTTCAAAGACCTGGAGGATGACAGGTTGGACGCTACAACGCAGAGCATTCGAttgactgctctctcctcctccataaGAGGCCCTAGCGCTCTCCTCACCAGCTCCATGCTCACTGACCCCACGTCTCCACACAAACACCTGGCCTCTCCAGACTGCACCCTGGACTATAGCCGTTCTCTGAACCGCCGAGCCTCTCCTGCTGTCAACGGGGCCCACCCTCACTCCATCTCCGACCACCGCAACAGTAACACATAGTGCCCACCATCAGGGATTCACACTGGTTACATGCATGTATTCATCTACAAGCTTTTCATTATAGAGTTGGATAGAGGGCTCACACGGAAGTGCGTTTTAACATGGGCATAGAGGCGATAATAACAAAGATAGTGGTGGGCCCTCTTTTTAACTCTATGCCTTACTTGACAGTACAATCGACACCCATCTCTATGCAGTACCGTGGTTGCAAAGCATCACCACAACAGTCTTCCGTCAATACCTCAACCAAAAAACAGCCAACCCTTCCCAAGCTGCGTGACTAGCAGCCAACCTAGAAAACAGCTAGCGTGAAGCCAAGCATACACACTAAGTGCGATTGTGATAAGAAAAGCAGGGTTAAACCTAGTGGAAGGTTCATAGCACATCGCTTGGGGTATCTTATAAGAGAACCACCAAATTTAGCACTGTGAAAGACGATTGCAGCTTTCTTTATAAACTGATATTTATGAAGATTTTTTATTGAATGTTACCTTGTGCAAAGAAAGCAGGCACAGCTTAAAGAAGACATGAAGTTTGACTGAAAATAGATTGAAAAACCAGCCATAAAGCCAACGTAGGTCAACATTCCAACAGGTCATACTAACGTTACATTTCTATACGTATTTCAACACTCAAAACACTTCTCTGAAAAACACTGTTTTAAAGCCCCAATGTTGACCTTTTTGTGACAGGTTATGTACTCTGCTGTTATCATGCCAATGTGTTTCATCTGAACAGATTAGATGTGATGATTATATTTATGCTGACATTCTGTGAAAGTGGTGCTGCCTTTCTAACTTCATGTAGCCTATGCATTAGCAATATATTCTTATTATTTTCAACAGACTTGACAAGTCACACGTTTGTTTTTATGTGCAGTCTTTTTACCACTACCGTCTTCTTTTTATTATTTGTGAAGAAGAAAAATGCCAATAAGCacaatatatgtatatttttatgAAATGTAGAAAAGAATATATGCAATAAACAAATCTCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU790751 lncRNA downstream 1974 29888306 ~ 29888581 (-) True G694673
TU790702 lncRNA downstream 105642 29783478 ~ 29784913 (-) True G694631
TU790549 lncRNA downstream 356804 29530229 ~ 29533751 (-) True G694488
TU790546 lncRNA downstream 357582 29529033 ~ 29532973 (-) False G694487
TU790970 lncRNA upstream 80572 30018897 ~ 30086140 (-) True G694865
TU790965 lncRNA upstream 86525 30024850 ~ 30027627 (-) True G694860
TU791003 lncRNA upstream 156429 30094754 ~ 30094981 (-) True G694898
TU791006 lncRNA upstream 161857 30100182 ~ 30100426 (-) True G694901
TU791009 lncRNA upstream 165647 30103972 ~ 30104230 (-) True G694904
XM_021612264.2 mRNA downstream 425111 29460990 ~ 29465444 (-) False LOC110529760
XM_021612266.2 mRNA downstream 425111 29460990 ~ 29465444 (-) True LOC110529760
XM_036986866.1 mRNA downstream 666791 29213787 ~ 29223764 (-) True LOC118965624
XM_036986844.1 mRNA downstream 676976 29212152 ~ 29213579 (-) True LOC118965608
XM_036986865.1 mRNA downstream 681627 29204150 ~ 29208928 (-) True LOC118965623
XM_036985249.1 mRNA upstream 34186 29972511 ~ 29985022 (-) False gtf2a1
XM_036985246.1 mRNA upstream 34186 29972511 ~ 29986359 (-) False gtf2a1
XM_036985247.1 mRNA upstream 34186 29972511 ~ 29986359 (-) False gtf2a1
XM_036985248.1 mRNA upstream 34186 29972511 ~ 29986359 (-) False gtf2a1
XM_036985250.1 mRNA upstream 34186 29972511 ~ 29986359 (-) True gtf2a1
TU789639 other downstream 931723 28958395 ~ 28958832 (-) True G693665
TU789291 other downstream 1296124 28593341 ~ 28594431 (-) True G693383
TU789000 other downstream 1408657 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU788741 other downstream 1774507 28115736 ~ 28116048 (-) True G692859
TU787547 other downstream 2574620 27315568 ~ 27315935 (-) True G691747
TU790962 other upstream 63438 30001763 ~ 30062168 (-) False G694858
TU790963 other upstream 100263 30038588 ~ 30062168 (-) True G694858
TU792305 other upstream 908577 30846902 ~ 30847209 (-) True G696068
TU792310 other upstream 916782 30855107 ~ 30855407 (-) True G696073
TU792778 other upstream 1539029 31477354 ~ 31478027 (-) True G696499

Expression Profile