RNA id: XM_021612287.2


Basic Information

Item Value
RNA id XM_021612287.2
length 2883
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110529769
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30217008 ~ 30227240 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACGGCCCATTGACAACGCACAAACGGCGTGTGTATGACTCAAATAgagtttcccatctcctcaaaatTGGCTCCGAGCGCACGCAGCAGGAGATGGACATTTTTTGTAAAAGAGCATCTGATTGGTCGATTCGGTAGCCATGTTTTTAACCTCCAGTTCcctctgttgttttagctagctagttgtttATCCGGTTAGCCGTCGTCATTTTTATTGCTATTTTTTTAAAGTCAGTTCGCAAACCCTTTCCTCTAATTTTCCAAGAGAACTAACGTTATGCCGGTGCACGCCCGCGAAAAGAAAGAAAGCAATCACGAAGAAATGGAGGTTGATTTTCCCGATCAAGACGCTAGCAGCACCGACGAAGAGGACACTGTAAGCTCTTCTGTATCCGAAGATGGAGACAGCTCGGATATGGACGATGAGGACTGTGAGAGAAGACGAATTGAATGCATGGACGAGATGACTACCCTCGAGAAGCAATTCGGCGACTTGAAAGAACAGTTGTACAAGGAGAGGCTAAGTCAGGTGGATATAAAGCTGAAGGAAGTGATAGCTGGCTGTGCCCAAGAGTATCTGGAACCACTGGCCAACCTGCAGGAGAATATGCAGATCAGGACCAAAGTAGCTGGGATCTACAGAGAGCTGTGTCTGGAGTCTGTGAAGAACAAGTATGACTGTGAAATCCAGGCTGCCTGCCAACACTGGGAGAGTGAGAAGCTGTTGCTGTTTGACACGGTGCAGAGTGAGCTAGAGGAGAAGATCAGACGCCTGGAGGAGGACCGACACAGCATCGACATAACCTCAGAACTTTGGAACGATGGTTTACATTCACGGAAGAACAAGAAGAGGGATCCCTTCTGCCCTgccaagaagaagaagcctgTTGTCGTCTCCGGTCCGTATATTGTTTATATGCTGCAAGACCTGGATATACTTGAAGACTGGACAGCAATACGAAAGGCGATGGCGTCGTTGGGGCCGCACAGGGTCAAGGTTGACGtccctGCCAAGGCTGACCGACACCACCATGTGGTGAGGTCTGAGGAGGGCAGACTGTTCTATGACAGCCAGTGGTATTGCAGAGGACAGGCCATATGCATCAACAGGAAGGACCAATACCCCACCAGtGCCATGATAACCACCATTAACCATGACGAGGTGTGGTTCAAACGGCAGGACGGCAGCAAGTCCAAGTTGTACATCTCTCAGCTGCAGAAAGGCAAATACACCATCAAACACTCCTAATGTCCCTCACGGCTTGCCGTACTTCCTCTCCCTGGATAACAAATAGTGAACTTCGGTGCCACGATCCCGTCCCTTACTTTCATTGCCGTAGGGGGAAACTACATTATGTCAATGGTCTGGAGAGCTGTAGGTCAGGGTGGGTAGGGGTTGTACAAGGTTGGTGACGAACTACTGCTTTCTCTAAATATGTATGTATGTTACAAATATCTGCAAGGCGTCCAAGTGTCGTTCCTCCTGGAAGAGAAAGAAGCAAATGCTGCTAAGAAGGGATGAGTTGCTGttgagagtagtggtggtgttgtagCATGCCTTTTTAAACAAGATGCCTACAGTCCTGAACTAACTCAGTGCAGTGAAGCCTTAATTCCTACGGCCTGTGAGAACAGTACTAGGATCAAGTCAAAGCGGGTCATTTTTTTTTGAGCGGGTGAGTAAATGGAAACCTACAGTGTACCATCCAGGTTAAGAATGAACTATTCAAATTTCCTAAACATTGAGATCGCATCTTTTACGCCGGCAGGCTGGCACAGCCAGTAGTATGTTTGCCCTCTGTACAGAACCCTTGTTGATTATGATGAGGGCCAGAAGATCTCTGAGGCCTGGTTAGAGACTAGGGCTTGAGAACTCTGTTGGAAACAttgtcaggaaaaactcctggccctaattCTGTGTCATGTCTTAACTTCACTGTGAACTCAGTAGCCATCTGCCTCTTGTAGTGTACTTTTGGAGACTCTCAATTGCGTATTCCTTGCGTCCTTTCGCCTCACCTCCCCCTCAAAACCGATTTGGaggagaaagccagaggtccctcccctctgaccttatCCTCCAACGGGTGTTGAGGAGTCGTCGGGGAGAGTGGACACGAGGAGTACGCAATTGAGATTCCCCCTGCGTTTTTCTGTGTCATCTTCCCTCCCCTGTGAAGAACTCCCTGCGTCTCTATGTTCGAACGATGCTCTACCTTTTTCTCCTGTAGTGCGCACTTGTGCACTCCTCCCTACCCATGCCAGAGGGATCTGATGACATTGAGAAGGGTCAAAGTGTCTGGTTGTCGTACAATCCCGTCCATGCAATCCCATCCACTCTTTTGCACATTATTGGATAGAGgggaaaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatagtaacGTACTGCTGGTTCAACCTCTATGTGGTCATGTGGTGCTTTACATTCACAGCAGCATCACATCTGTATAAAAGTATCAACTGCCAACAGTGTTGCATTGAGAAGATTCTCAACATGTTATGAATTATGTAGAGATGTTACAAGCTGTAATGTCGGGAGTATTTGCAGTGTTGtggttttgttgtatttttttgcaGCTCACGAAGAAGGTCTGTCATAATACGATTAGGTCAAATGTTACAGTGCCATGAATTGAAACGTAGTATTGCTTTTTGTCCTCGAGTTTTATTTGTCAAGTATGGattgttattttgtgttgttttttttggggggggggggggggttgtagtaAGTCATAACGCTCAGCCGCTACACTACGTTATCTTTTCATATCATGCGGGAGGGAAATATGAATACAACTCTTGTCATAGTGCCAATGCATGTACAGCAAATTAAATGTTTAATTTTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU791234 lncRNA downstream 29508 30186472 ~ 30187500 (-) True G695099
TU791226 lncRNA downstream 41631 30175004 ~ 30175377 (-) True G695092
TU791050 lncRNA downstream 57654 30155584 ~ 30159354 (-) True G694939
TU791048 lncRNA downstream 58697 30154300 ~ 30158311 (-) False G694939
TU791237 lncRNA upstream 901 30228141 ~ 30233037 (-) True G695102
TU791235 lncRNA upstream 24241 30251481 ~ 30252854 (-) True G695100
TU791312 lncRNA upstream 65214 30292454 ~ 30296845 (-) True LOC110529226
TU791336 lncRNA upstream 72920 30300160 ~ 30416414 (-) True G695152
TU791386 lncRNA upstream 193495 30420735 ~ 30420956 (-) True G695199
XM_036985251.1 mRNA downstream 154764 30001764 ~ 30062244 (-) True ches1
XM_036985252.1 mRNA downstream 155041 30001764 ~ 30061967 (-) False ches1
XR_005052851.1 mRNA downstream 176997 30038581 ~ 30040011 (-) True LOC118965505
XM_036985247.1 mRNA downstream 230649 29972511 ~ 29986359 (-) False gtf2a1
NM_001124296.1 mRNA upstream 16264 30243504 ~ 30251391 (-) True LOC100135953
XM_036985270.1 mRNA upstream 36345 30263585 ~ 30292341 (-) True LOC110529225
XM_036985256.1 mRNA upstream 65211 30292451 ~ 30419612 (-) False LOC110529226
XM_036985257.1 mRNA upstream 65211 30292451 ~ 30419612 (-) False LOC110529226
XM_036985258.1 mRNA upstream 65211 30292451 ~ 30419612 (-) False LOC110529226
TU790962 other downstream 154840 30001763 ~ 30062168 (-) False G694858
TU790963 other downstream 154840 30038588 ~ 30062168 (-) True G694858
TU789639 other downstream 1258176 28958395 ~ 28958832 (-) True G693665
TU789291 other downstream 1622577 28593341 ~ 28594431 (-) True G693383
TU789000 other downstream 1735110 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU792305 other upstream 619662 30846902 ~ 30847209 (-) True G696068
TU792310 other upstream 627867 30855107 ~ 30855407 (-) True G696073
TU792778 other upstream 1250114 31477354 ~ 31478027 (-) True G696499
TU792983 other upstream 1430486 31657726 ~ 31679735 (-) True LOC110529793
TU793919 other upstream 1987246 32214486 ~ 32217549 (-) False LOC110529804

Expression Profile