RNA id: XM_036985257.1


Basic Information

Item Value
RNA id XM_036985257.1
length 3766
RNA type mRNA
GC content 0.50
exon number 25
gene id LOC110529226
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30292451 ~ 30419612 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCCCTAAGTTCGATGTGATCGGCTCTTGGCCCTGCCGTGAGTTCTCAGTGCGGGCGACAGCGCTGCTGAACATGGCGTCAGACGGGATGATTTTAACAAACCACGACCACCAAATCCGTGTCGGAGTCTTGACAGTGAGTGACAGCTGTTTTAGGAACCTGGCAGAGGACCGCAGTGGAATCAACCTCAAAGATCTGGTGCACGACCCTTCCCTgctgggAGGCTTTATTTCAGCCTATAAGATCGTGCCAGATGAAATTGATGAGATTAAGGAGACTCTGGTGGACTGGTGTGATGAGAAAGAACTCAATCTCATCTTGACAACCGGGGGGACCGGCTTCGCTCCCCGTGATGTCACACctgagGCTACAAGAGAGGTGATAGAGCGGGAGGCTCCAGGGATGTCTCTGGCCATGCTGATGGGTTCTCTCAACGTCACACCACTAGGCATGCTCTCCAgacccGTGTGCGGCATCCGTGGCAAGACACTTATCATTAACTTACCAGGGAGCAAGAAGGGTTCACAGGAGTGTTTCCAGTTCATCCTGCCCGCGCTGCCCCACGCCATTGACCTGCTCCGGGACGCCGTGGTCAAGGTGAAGGAGGCAGTGGACGAGCTGGAGGACCTCCCCTCGCCCCCGCCTCCCCTCTCACCGCCCCCCAATAGCTCGCCGCGGCGCCAGACGGAAGATAAGGGCGTGCAGTGCGAGGAGGAGGACGATGAGAAGAAGGACAGCGGTGTGGCGTCCACTGAGGACTCCTCGTCCTCGCACATCACCGCCGCCTCCATCGCCGCCAAGGTAACCAATGGGGAGatCCCAGATAGCATCATCTCCAGGGGTGTCCAGGTTCTCCCCAGAGACACAGCCTCTCTGAGCACCACGCCCTCTGAGTCGCCCCGTGCCCAGGCCACCTCGCGCCTCTCCACCGCCTCCTGCCCCACGCCCAAAGCGCGGCTCCCCTCCTGTTCATCCACCCTAAGCATTGCTGAGGCCTCACGGAGAGAGTTCAGGGCTCACCTGGATGAGGTCATCACGCTCAAGTCAAGGTACTCTACCTTGGACCAGCTCCAGTGTAGGTTGGAGGGGCTTAAAGATGATCGCAGGACCCATAGGACCTTCAGCTCTCGAGTGCAGTCACGATACAGCAGCAAAGAAAACATCCTAAGATCAAGTCACAGTGCAGTGGACATCACCAAGGTGGCCCGGAGACACCGCATGTCCCCGTTCCCCCTCACCTCCATGGACAAGGCCTTCATCACTGTGCTAGAGATGACCGCCATCCTGGGTACTGAGATCATCAACTACAGAGaTGGGATGGGTCGAGTCCTGGCTCAGGACGTTTATGCCAAAGACAACCTGCCCCCGTTCCCCGCCTCTGTCAAGGATGGTTATGCTGTAAGAGcGGCTGATGGTCCAGGTGACCGTTTCATCATCGGAGAATCCCAGGCTGGAGAACAGCCCACCCACACAGTGATGCCAGGGCAGGTGATGAGGGTGACGACGGGGGCTCCTATCCCCTGTGGGGCGGACGCTGTGGTACAGGTGGAGGACACAGAGCTGCTCCGCGAGTCTGAAGACGGCACCGAGGAGCTGGAGGTGCGGATCCTCGTCCAGGCTCGTCCAGGACAGgacatcagGCCCATAGGTCATGACATCAAGCGTGGGGAATGTGTCCTGTCCAAGGGAACCCACATGGGCCCCTCTGAGATTGGCTTGCTGGCCACCGTAGGGGTCACCGAGGTGGAGGTGCAGAAGTTCCCCGTGGTGGCTGTCATGTCCACAGGCAAcgagCTGTTGAACCCAGAGGACGACCTCCATCCAGGGAAGATCAGGGATAGTAACCGCTCCACGCTGCTCGCTACCATCCAGGAGCACGGATATCCCACCATCAACCTGGGCATCGTGGGAGACAAGCCCCACAGCCCAGACGACCTCCTGAACGCCCTGAACGAGGGCATCAGCCGTGCTGACGTCATCATCACCTCTGGAGGGGTGTCTATGGGAGAGAAGGTATGTGAGCAAATCGACTATCTGAAACAGGTGCTGGATATTGATCTGCATGCTCAGATCCACTTTGGACGAGTCTTCATGAAACCAGgTCTCCCGACAACATTCGCCACGTTGGACATGGACGGCGCTCGCAAACTCATCTTTGCCCTCCCAGGTAATCCCGTGTCTGCCGTGGTGACATGTAACCTCTTTGTTATCCCCGCCTTAAGGAAGATGCAGGGGATCCTGGACCCACGGCCCACCATCATCAAAGCCAGGTTGTCATGTGACGTAAAGTTGGATCCTCGCCCTGAGTACCACCGCTGCATTCTGACATGGCACCACCAGGAGCCTCTGCCATGGGCACAGAGCACAGGTAACCAGGTGAGCAGCAGGCTGATGAGCATGCGCAGCGCCAATGGTCTCCTGATGCTACCTCCAAAAACAGAGCAATATGTGGAGCTGCACAAGGGAGAGGTGGTCGACGTCATGGTCATCGGCCGGCTATGATGTCATCAAAGGGGGACGTTGAGATGGcttcatagagagagagggttaaaatGGGTGTTTCGCGGTGCATGTCCACATATCATTGACTATTCTGTAATATGCAACGGCACAGCTAGTTTTTATTGATTTGGATAACGTTGAGGTATAGTCAACATCTCGATCACAAACCTAGGTACATATGATACAAAAAATATAGAATTACTTTAAAAAGATTATAATAGTATTTCAGACAAAGAAAAATATAACTTTTAAAGAAAAAAATCGAATTATCAAAAGAGATTTATTCTGTAatatattattatgattattcgtattattgttatcattattcttcttattatcattattatattataagtCAACTTAATTCCTTTCATTGCAATTGCTTTGTGTGTTCAATGCTAGATCTTATCGATATCGGTAGCATTTTAATAGAGCTGTAGGTGCCTGCcaggacaaaaaaataaataaatatatatatatatattattttctcaTCTTTAGTGGgggaaaaatgtttgtttttttaaatataaagaaaaacaatGAGGAAGACTCCAGATTTCCCACGGTGCTCGGTtaagaggaaggaggggagggcaTAATCTAGGTCTACTTTCTCTGTGGTGTGACGCTTTAACGGTGACGCCACACACTTCTATTTTTCTCTCGTTAGTATGCATCATAATGGCTTCACAAAGAGCTTTGCTTGTTGTTTATCTTGTGAGTCTTGTTTATGTGCGCAGTGCCAAATGCCTGGGCAGGGACGATGGTGGTGATAGGAGGGAAGGGGGCAGTCACCCACCAACCTGCCCAGACCCTGAAGCTTCCTTATTTATCATCTGACCAGGTGCAACTCTGCGCCCGAACCCCCTGGGGGCGTGGTCACCCGTGAAAAACAAAAACTTTTATTTGATCGACTAAGAGTAAGGGGGGGggaatgaaataaaataaacagcTTCTTTACGTGCTGACAGCCTTTTTAACTGActtcacaaaaaaatgtacagataaaaaaaaatgcgAAGAAGATGAACCATATTGTACAGATATATGTGACCAGCACTCCTAAGGAAATGATTATTATTAAGCAATGAAGAGACATTGAACAACGCTGTACTATAACACATTTTCCGTAATGATATGAAACTGATGAAAGAGACTACGATAATAAAAATCCTTGatcattatgtaaaaaaaaaaaattacaaaaattgTTGGGTTTCCTTTTTTCAAATAAAAACCTAttcaaagaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU791235 lncRNA downstream 39597 30251481 ~ 30252854 (-) True G695100
TU791237 lncRNA downstream 59414 30228141 ~ 30233037 (-) True G695102
TU791234 lncRNA downstream 104951 30186472 ~ 30187500 (-) True G695099
TU791226 lncRNA downstream 117074 30175004 ~ 30175377 (-) True G695092
TU791050 lncRNA downstream 133097 30155584 ~ 30159354 (-) True G694939
TU791386 lncRNA upstream 1123 30420735 ~ 30420956 (-) True G695199
TU791404 lncRNA upstream 16727 30436339 ~ 30436663 (-) True G695217
TU791420 lncRNA upstream 25843 30445455 ~ 30445671 (-) True G695233
TU791619 lncRNA upstream 109061 30528673 ~ 30529101 (-) True G695424
TU791735 lncRNA upstream 284774 30704386 ~ 30704677 (-) True G695537
XM_036985270.1 mRNA downstream 110 30263585 ~ 30292341 (-) True LOC110529225
NM_001124296.1 mRNA downstream 41060 30243504 ~ 30251391 (-) True LOC100135953
XM_021612287.2 mRNA downstream 65211 30217008 ~ 30227240 (-) False LOC110529769
XM_036985273.1 mRNA upstream 109677 30529289 ~ 30687478 (-) True LOC110529771
XR_005052854.1 mRNA upstream 347639 30767251 ~ 30769345 (-) True LOC118965507
XM_021612293.2 mRNA upstream 492519 30912131 ~ 30989709 (-) True LOC110529773
XM_021612294.2 mRNA upstream 604764 31024376 ~ 31044032 (-) False LOC110529774
XM_036985274.1 mRNA upstream 604768 31024380 ~ 31044029 (-) False LOC110529774
TU790962 other downstream 230283 30001763 ~ 30062168 (-) False G694858
TU790963 other downstream 230283 30038588 ~ 30062168 (-) True G694858
TU789639 other downstream 1333619 28958395 ~ 28958832 (-) True G693665
TU789291 other downstream 1698020 28593341 ~ 28594431 (-) True G693383
TU789000 other downstream 1810553 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU792305 other upstream 427290 30846902 ~ 30847209 (-) True G696068
TU792310 other upstream 435495 30855107 ~ 30855407 (-) True G696073
TU792778 other upstream 1057742 31477354 ~ 31478027 (-) True G696499
TU792983 other upstream 1238114 31657726 ~ 31679735 (-) True LOC110529793
TU793919 other upstream 1794874 32214486 ~ 32217549 (-) False LOC110529804

Expression Profile