RNA id: XM_021612325.2


Basic Information

Item Value
RNA id XM_021612325.2
length 2755
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110529792
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31602683 ~ 31606191 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAATGACAGGCTTTATAAGGAGAGAAAACCTTATGTTCCGCAAATCTAATAGCTTTTCTGTGCGAACATGATAAACAAATTATATCGGGGGATGCTGGCCGTACTTTACAAGATTAGGCTGTAGAAGCCCAGAGGCTCAGGGGATTCAAAGGCCAGTGTTCCCACTGGTCCAGAAACATTTAGGAGGCTGGTTGCTTTAGTGTAATACAGTCCTACAGCCTAGCCATGGCTGTTTTCTGATGAAACTGTTTCATTATTAATGCTGGAAAGACTGTCCAAACTTCCAACCAAATTTACATTGAACGCGACAGAAAAAGTTCCAAAATGTACCGTGTGTTTCATCAGTCACATAGACTTTTTAGTGTACCCTGTGAAATTAATCTGGCAAGTTTGCTGGAAAGAGAACTGAAACAAGCTCCACAGCCAATTTATAATATCCTCAGatggaaacaaacaaaaataggACAAGGTTTAACTCTGGATACGTGTATTCAAAATATGTTTACTTCTCTAATGGACTTTACCACACTTATATGGATCTAGCGCAATGCCGTTTACTTGCAAAACATTCCTACTGTAAATGTGCTTCCTTTTATATCTCTCTAGTGAAACAACAGTGGGTTATGGTTTTGATAAATAGTTGAGCCAGAAAAAAGTAGGCCTACTTAGGGGAAAAACTGGTTTGTGTTGGAGGCCAAGTGACGACATTGTGATGATCTGTGTTCGGCTCATATAAGAGTGGCCATCCTCCCAGAACGCTCTTCAGAGGAGGCcagatggtgatgatgataataCATGGGAATGAACACGGAGAAAGAGCACATCTTGACTGAGACCACAAAGCACTGGAGATAAGTTTCCCAATGTTCAGGAACACAACCGAGAGGCTCCTCCCCACTGAGGACCCTCACTCAGAGCTGGATTGGACCGAGTTGGACCCCTataactgtacactactgtacaaCTACACTGCAGCCTGGGACTGGCTCTCCACCTACCATCCAGCCTACCTGGTTCTGCTCAGTGTGGTGGGCGTGTTGGCCAACGGCCTGGTTCTCTATGTCTTTTGCCTGCAGAGAAAGCTATGCACCGTGGCCGATGTCTACCTGGGCAACCTGGCCGCTGCCGACCTGGTCATAGTGTCCTGTCTACCCTTCTGGGCCGCTACCATTGCTAACAACTACCACTGGGCGTTCGGCGAGCCAATGTGCAAGCTGGTCAACGTGGCCATCTCCATGAACTACTACTGTAGTGTTTTCTTCCTGGTGCTGGTTAGTGTTGATCGCTACCTGGCTCTTGTCCGGCCCATGTGCCAAAGCCGACTGCGGAGGGCGTCCTGGGCCAAGCGCATCTGCCTGGGAATATGGATCATGGGGTTCCTGCTGAGTTTGCCCATCCTGTTCTTCCGCAAGGTGAAATACGTGGCCAAGGCGGGGGTGACAGCCTGCTACTTGGCTTACCCCCATCCAGACTGGGAAATTCAGCGCAATATCACCAATAACGTGGTTGGGTTCCTGCTTCCTGTGATAGTGGTGGCATACTGCAGTCGCCACATTGTGATCGCTCTGAAAAATGGTCAGATCAGAAAAACTCCTGGTGTGAGGTCAGAGAGGAAGGCCACACAACTGGTCCTGACTGTCCTCACAGTCTTCCTCATCTGCTGGACACCCTACCAGGTGGTGCGCTTCCTGGACACGCTGGATTACTTCCAGGTCACTCCAGGTTGCCTCTGGGGTCACATTCTGGACATTAGCATACAGCTGTCCACATACCTGGCATACGCCAACAGCGCCATTAACCCTTTCCTGTATGTCATTGTGGGGAGACACTTCAGGAAGAGAGCAAAAGAAGTGTTCAGGACAATGTTAAACCGCAGATTGACAGAGAAATCATTCCTGACGGTCAATTTCACCTCAAGTGGAAAACTGGACACTCAAAGGATACAATGTAAACAACTAGTGAAACAAACTGTGACGTGACAAGTCTCTGTCTTGAAGTCTATCCGTCCGTCCATCTGAACTGATCCAGACTGAACATTTAATCTTCATCTGTTTTTACTTTTAAATTGTAAATATGTTCTTTCTTCTAATCGGATCGATATCCGTCAGTCGTTTGTGTGAGACCAAATGAGGTGAACAAGTGATCAGGGACCTCCAGATGATTTCTGTCTTTGTTAAACTTGTAATTACCGGAGGACATCTGTTCCGAATCATTAAGACCTTTATTAATACAAATAGTCCATTTATCTGTCTACAATATTCTACCTCGTAAGCAATCGAACTCCTGTTTTAGTTCCTTTGTGGATTTATGGAGAAATTCAGACTACAGACTCCATTCGGGTGCACGACACTGAAGATTTATGCTGTAATATAGGCACTAAATTACGACTGTCCAGTGTAGAAGATTAATCTAAATGTGATCTATGAAGTCTTTTATTGTCATTGAGACCCTTTTCATTTTGATGGAGTGTGCCACTATGAGAAATGATTCTCCCAGAGCAGGACTACGAATGGGACGTATTGCACTGTGAACTAATTTAAATGTAAAAGGTCATATTGTCCTTTAAAAAGCTCATATCATTTTTTCTTTTTGGCCACTAAATCAAATGAGGTTCTGGTTGAAAGGTCTGTATTTCTTATCAATCCTGTGAAAAAAATTTTTTGTTATTGCATAAAAACAACTTTTGTATGTATCAAAATGTTGTCCACTACCGTGATGACGTAAATAAATCAATGTGGGGTTTGAGTACTCAAC

Function

GO:

id name namespace
GO:0003008 system process biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU792825 lncRNA downstream 28164 31572269 ~ 31574519 (-) True G696543
TU792811 lncRNA downstream 51403 31550512 ~ 31551280 (-) True G696531
TU792645 lncRNA downstream 200127 31397740 ~ 31402556 (-) True G696378
TU792635 lncRNA downstream 240369 31362041 ~ 31362314 (-) True G696369
TU792633 lncRNA downstream 242466 31359968 ~ 31360217 (-) True G696367
TU792922 lncRNA upstream 29133 31635324 ~ 31635619 (-) True G696639
TU792923 lncRNA upstream 31949 31638140 ~ 31638372 (-) True G696640
TU792932 lncRNA upstream 36416 31642607 ~ 31642920 (-) True G696649
TU792942 lncRNA upstream 48209 31654400 ~ 31654607 (-) True G696659
TU792945 lncRNA upstream 49808 31655999 ~ 31656452 (-) True G696662
XM_021612323.2 mRNA downstream 98693 31486817 ~ 31503990 (-) True LOC110529791
XM_021612322.2 mRNA downstream 144436 31453334 ~ 31458247 (-) True LOC110529790
LOC110529789 mRNA downstream 167313 31432392 ~ 31435370 (-) True LOC110529789
XM_021612321.2 mRNA downstream 170956 31428524 ~ 31431727 (-) True LOC110529787
XM_021612318.2 mRNA downstream 221605 31376592 ~ 31381078 (-) True cgrrf1
XM_021612326.2 mRNA upstream 51441 31657632 ~ 31679802 (-) False LOC110529793
XM_021612327.2 mRNA upstream 51441 31657632 ~ 31703525 (-) False LOC110529793
XM_021612332.2 mRNA upstream 526492 32132683 ~ 32135194 (-) True LOC110529796
XM_021612343.2 mRNA upstream 608260 32214451 ~ 32217570 (-) False LOC110529804
XM_021612342.2 mRNA upstream 608260 32214451 ~ 32217572 (-) False LOC110529804
TU792778 other downstream 124656 31477354 ~ 31478027 (-) True G696499
TU792310 other downstream 747276 30855107 ~ 30855407 (-) True G696073
TU792305 other downstream 755474 30846902 ~ 30847209 (-) True G696068
TU790962 other downstream 1540515 30001763 ~ 30062168 (-) False G694858
TU792983 other upstream 51535 31657726 ~ 31679735 (-) True LOC110529793
TU793919 other upstream 608295 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other upstream 608295 32214486 ~ 32217549 (-) True LOC110529804
TU794118 other upstream 892608 32498799 ~ 32499410 (-) True G697774
TU794745 other upstream 1383054 32989245 ~ 32990061 (-) True G698356

Expression Profile