RNA id: NM_001160613.2


Basic Information

Item Value
RNA id NM_001160613.2
length 1035
RNA type mRNA
GC content 0.52
exon number 9
gene id bpnt1
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32269095 ~ 32278234 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGTACAACAAGTCCGGAGCTGTCTCTTCAGGAGTTTACAATGTCTGGAAATCCAGCTGTGTTGATGCGTCTGGTAGCTTCGGCTTACGCTATGGCAGAGAAGGCTGGCGCCATTGTACGAAGGGTTCTTCAGAGCGGAGAGCTGGGCATCGTGGAAAAGACAGGGGCCAACGATCTACAGACACTGGCAGACCGGCTGGTCCAGCAGAGCATCTGTGCCTCCCTGTCTAAAAGCTTCCCCAAAATCACCATAATCGGAGAGGAGGATCTGCCAGAGGAGGCTGTCAAAGAGGACCTGATTGAGAGCGGTCAATCTGAAGACATCCTACAGAAGTCCTGTCCAGCAGAGTACAGTGCCCtgaaagaagaggagCTGGTTGTGTGGGTCGACCCCCTTGATGGCACCAAAGAATACACTGAAGGGCTTCTTGATCATGTGACTGTTCTGATCGGCATTGCATATGGCGGGAAGGCCATTGCTGGGGTCATCAACCAGCCCTTCTTCAATTATCAGCTGGGGGCGGAGTCAGCAGACATGGGGAGAACTCTGTGGGGAATGCCCGGACTGGGCGCTTTCGGGTTCGAGCTACAGGAGGTCCCGGATGGCCGCCGCATTGTCACCACAACCCGTTCCCACAGCAACAAACTCGTCACAGACACTGTGGATGCCATGGAACCTCATGATGTGATAAGAGTCGGCGGAGCAGGAAATAAGATTATTCAGCTTGTGGAGGGGAAGGCTTCAGCTTATGTATTTGCCAGTCTAGGAACTAAAAAGTGGGACACATGTGCCCCTGAAGCCATCCTGCATGCAGTAGGAGGTAAGCTGACAGACATGCATGGCAGTGCATTGTGTTATGATGCTAACGTGAAGCACATGAACTCCGCTGGGGTGCTGGCCACTCTACGCAACCACCAGTATTATGCCAGCAGAGTGCCCCAGTCAGTCCTGCAGGCTCTCAAGCCCTGATTGATAAATTTACTGTACCACGCATTGTCCAAAAACAAATTAGTATAAAATGTTCTTTAATCAT

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process

KEGG:

id description
K01082 cysQ, MET22, BPNT1; 3'(2'), 5'-bisphosphate nucleotidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU793972 lncRNA downstream 492 32255521 ~ 32268603 (-) True G697632
TU793944 lncRNA downstream 44282 32224607 ~ 32224813 (-) True G697604
TU793897 lncRNA downstream 109047 32159223 ~ 32160048 (-) True G697561
TU793896 lncRNA downstream 110440 32158354 ~ 32158655 (-) True G697560
TU793895 lncRNA downstream 110876 32157997 ~ 32158219 (-) True G697559
TU793982 lncRNA upstream 6656 32284890 ~ 32285129 (-) True G697642
TU793983 lncRNA upstream 24636 32302870 ~ 32303081 (-) True G697643
TU793984 lncRNA upstream 24923 32303157 ~ 32305119 (-) True G697644
TU793989 lncRNA upstream 46577 32324811 ~ 32325062 (-) True G697649
TU793991 lncRNA upstream 50584 32328818 ~ 32330202 (-) True G697651
XM_021612342.2 mRNA downstream 51523 32214451 ~ 32217572 (-) False LOC110529804
XM_021612343.2 mRNA downstream 51525 32214451 ~ 32217570 (-) False LOC110529804
XM_021612332.2 mRNA downstream 133901 32132683 ~ 32135194 (-) True LOC110529796
XM_021612327.2 mRNA downstream 565570 31657632 ~ 31703525 (-) False LOC110529793
XM_021612326.2 mRNA downstream 589293 31657632 ~ 31679802 (-) False LOC110529793
XM_021612356.2 mRNA upstream 7824 32286058 ~ 32287169 (-) True LOC110529808
XM_036985295.1 mRNA upstream 10830 32289064 ~ 32300567 (-) False LOC110529806
XM_021612352.2 mRNA upstream 10830 32289064 ~ 32300571 (-) False LOC110529806
XM_021612345.2 mRNA upstream 10830 32289064 ~ 32300579 (-) False LOC110529806
XM_036985294.1 mRNA upstream 10830 32289064 ~ 32300581 (-) False LOC110529806
TU793919 other downstream 51546 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 51546 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 589360 31657726 ~ 31679735 (-) True LOC110529793
TU792778 other downstream 791068 31477354 ~ 31478027 (-) True G696499
TU792310 other downstream 1413688 30855107 ~ 30855407 (-) True G696073
TU794118 other upstream 220565 32498799 ~ 32499410 (-) True G697774
TU794745 other upstream 711011 32989245 ~ 32990061 (-) True G698356
TU795919 other upstream 1664788 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 1745057 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 3304764 35582998 ~ 35589877 (-) True G701454

Expression Profile