RNA id: XR_005052857.1


Basic Information

Item Value
RNA id XR_005052857.1
length 2567
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110529812
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32306142 ~ 32322140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagatgactaaactgcttggagtaaccctggattgtaaactgtcatagtcaaaacatattgatacaacagtaccTAAGTTGGGGAGAAGTATGTCcgtaataaagtgctgctctgccttcttaacaacactatcaacaaagcTACTACTGTTAAGTCgtttggtcaggtgccacaaatttaagacatggcaaaatgcgtaggatttgaaattgtatttttttttttcgtCAACAAGAGTGGTTCTCTGTTCACTGTACATTTGATACTTTTCCCATTGTGTTTGGCCAAAGAGTGTTGCCCTCTTTATGTGGGTGGGTATATACTATAGCTCCTGttagtttgtttcacaataaatgtATACAAATGGATGAAAAAACACCACACTACAACAGCATTTCTAGCTCATAAAGGTGGAATCTATATGTTGAGTTTTTTCCCCCTAAAGTGTTGCCCTGAGTTTTTCTGTGAGTTATTAGCGTACATTTTTCAGGACAGTTGTAGTTTGTTTCATTGCCACGAGGTAGAGAAAAAGGTATGGATTGCGCCTTTAATACACCAAACATTCAATCACAATGAAAGACACAATGTATACACGAGGTCACTCAAATCTAATACCGACACATAAAACAACCAGGAAAATTGCCTAGAACTAAGACAGGCTAATGGAGTTTTCACATTATGAAATTCGGTTCCATGGTTCAGTTCCCTGTAGCATTTGTGAGAATTGTACAGAATAAATGTTGCTTTCAAAAGAACCCGAAAAGAACTGATTTGGGATGTGATCAGCACGACGCACATTCTACATGACGTTAGCGAGCTAGCTTGTTTACAACGGGCAAAAAAGTTCCACGCGACTGGTCTTGAATCCTGGACCCATTACTCATGCAGGTCCAGGATTAATTTCAGCCAGGGTTTGCTTGTGTTTCACACATGCTTTATACCGTGGATCAGGGTACCAAACACTCCAGGAAAATATCGTAAGGGGATATGGGAATTCATCACTTTAGAAAGTGTCAAATGTCAACAGAGAATATGTGGACGTTCCATGGGAGTTCTCTAACTGGCACAATGGAACAAAGAGAAGGATGTGAATCATGACTGCCCATGGAACGCCACACACGCACCACAACATTGATAGTGACTAAACCACACCTAGACACTAAATATCATTTTTCTTGTTCTATTGGTTGAGGTGAACGGTAAGGTTGACATGTTTTGTTCTCATGAATTGTTGTAGTGAATATGTGTCCTTGAACTATTTGGTTCATTAAAGGTCTTTGTAGCCTAGTTGTTCTAACTTTATGATGTCCATGACATGTTTAGGCATGTTTTCGCTGGTAAGGGAAAAGATACAGGATTTTATTCCCCCTTTACTGTTTATTGGGACATGGCACAATCTGGCCTACCCCTCCCAACAGAGGCCCAACCTCTATTTCCCTTTCATGCTTTCTAATCCTGCCGTAAGGGTGTCCAGAAGAACTTGTTCTCTCCCTTCGTTTATAAGACTTCGTCACTGTTTCTTATCGCTTTATTGAACTGATGAGTACCAAAAACCCAGAGAAATGTTTCACAGGTGCACAGCTCACATAGGGAGTGTAAATGAATGACATCCCCGCAGGTCTGAATACAGCATGACAAGAACAACCTGTTCACCGGTGCCAAAATGCTGTCAAGTACTTTCCTTACAGGAGCTTTGCGTATCTTCCTGTATATCGGATGTGAGGAGGGTCCTAGTGTCTGTGTGCAGACGTGTAAAAGTTGCTGATCAAGACAACATCTTGAGCATTGACTCTTGGGCAGCATCCAGTCAGCCAACTCTATTCCATCACTGAGCAGAAAACACCTGTAGACAGCTgCTCCACAGAAGGAGAGTTACGGACTGGGCCAGTGAGGCCACAGCACCGCAGGAGACTACAGGTGACCGCCATCTTTAACCACCCTCTCGCTTGAACAGCTTGTGGACTAGAGTGCCAGAGACACTAAAAGCTAAAGTAAAAGCATCTGGAAATGGAACTATTTTGTTGTGTGTTTACTCATTGCCGCTTGTGTAGTCAGGCACAACCACTCTTCCCGACAGGCATTaattggtagatgggttaaaagaaaagcagacattgaatatccctttgagcatgcggaagttattaattacactttggatagaGTATAAATAAGCCCACTCACTACAAAGAtccaggcatccttcctaactcggtTGCCGGAGAAGAAAggaacagctcagggatttcacaatgaggccaatgtggattttaaaacagttagtttaatggctatgataggagagaacagaggatggatcaataacattaGTTACTCCCCAATACtaatagagtgaaaagaagaaatcctgtacagaacaaaaatatttcaaagcatgcatcctgtttgcaacaaggcaccagAGAAATACTGCAAAAAAAGTGTCAAAGCAATTAACCTTTTCTCTATAcaatgtgttatgtttggggcaaatacaacacactactgagtaccactctccatatctccaagcatagtggtggctgcatcatgttatgggtatact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU793984 lncRNA downstream 1023 32303157 ~ 32305119 (-) True G697644
TU793983 lncRNA downstream 3061 32302870 ~ 32303081 (-) True G697643
TU793982 lncRNA downstream 21013 32284890 ~ 32285129 (-) True G697642
TU793972 lncRNA downstream 37539 32255521 ~ 32268603 (-) True G697632
TU793944 lncRNA downstream 81329 32224607 ~ 32224813 (-) True G697604
TU793989 lncRNA upstream 2671 32324811 ~ 32325062 (-) True G697649
TU793991 lncRNA upstream 6678 32328818 ~ 32330202 (-) True G697651
TU794012 lncRNA upstream 42345 32364485 ~ 32364689 (-) True G697671
TU794013 lncRNA upstream 42780 32364920 ~ 32365217 (-) True G697672
TU794024 lncRNA upstream 62213 32384353 ~ 32384604 (-) True G697683
XM_021612349.2 mRNA downstream 4849 32289064 ~ 32301293 (-) False LOC110529806
XM_036985293.1 mRNA downstream 4849 32289064 ~ 32301293 (-) True LOC110529806
XM_036985294.1 mRNA downstream 5561 32289064 ~ 32300581 (-) False LOC110529806
XM_021612345.2 mRNA downstream 5563 32289064 ~ 32300579 (-) False LOC110529806
XM_021612352.2 mRNA downstream 5571 32289064 ~ 32300571 (-) False LOC110529806
XR_005053020.1 mRNA upstream 95332 32417472 ~ 32421085 (-) True LOC118965610
XM_021614360.2 mRNA upstream 240991 32563131 ~ 32569877 (-) True LOC110531086
XM_036985337.1 mRNA upstream 247876 32570016 ~ 32589797 (-) False cep43
XM_036985335.1 mRNA upstream 247876 32570016 ~ 32589808 (-) False cep43
XM_036985336.1 mRNA upstream 247876 32570016 ~ 32589809 (-) False cep43
TU793919 other downstream 88593 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 88593 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 626407 31657726 ~ 31679735 (-) True LOC110529793
TU792778 other downstream 828115 31477354 ~ 31478027 (-) True G696499
TU792310 other downstream 1450735 30855107 ~ 30855407 (-) True G696073
TU794118 other upstream 176659 32498799 ~ 32499410 (-) True G697774
TU794745 other upstream 667105 32989245 ~ 32990061 (-) True G698356
TU795919 other upstream 1620882 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 1701151 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 3260858 35582998 ~ 35589877 (-) True G701454

Expression Profile