RNA id: XM_021612387.2


Basic Information

Item Value
RNA id XM_021612387.2
length 3282
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC110529828
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33484801 ~ 33549308 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagacagagagagagagagagagagagagagagagagagagagagagagaaacaaagagagatagaaacaaagagggaaagagagagtcgTGATGCACACGGTCTGACGCTGCGCTTCATTGTATCCTCAGCgagtgtattagtgtgtgtagaCAGTCCTGCTTGCTTGTAGCATCCTCGGAACTGCATCAGTGAATTTCGACTAGGCTCATTTCTTTCCAAGGAAACCTCACCACAGGGGTCGACAGAAAAGTAAACAGTTTGACTAATAGCGTCTCTGTCCGCACATAACCCACTCTGAAGAAGAGCGCAAAGCCCCATTGACTTCGCACTCTTTCAAGACAAAATGGGAGCGAAAAACAGCAAGCTGACCCCGGAGGTGATGGAGGATCTGGTGAAGAGCACGGAATTTAATGAGCACGAGCTGAAACAGTGGTACAAAGGCTTCCTGAAAGACTGCCCCAGTGGACGACTCAATCTAGACGAGTTCCaacaactctatgtgaagTTTTTCCCCTACGGAGATGCTTCAAAGTTTGCCCAGCATGCATTCAGGACCTTTGATAAGAACGGGGACGGCACCATCGATTTCAGAGAGTTCATCTGTGCCCTGTCTATCACGTCTCGAGGCAGCTTCGAACAGAAACTCAACTGGGCCTTCAACATGTACGACCTGGATGGAGATGGCAAGATCACACGAGTGGAGATGCTGGAGATCATTGAGGCCATCTACAAGATGGTGGGGACTGTGATCATGATGAAGATGAACGAGGACGGCCTGACGCCCGAGCAGCGAGTGGACAAGATCTTCAGCAAGATGGACAAGAACAACGACGACCAGATATCACTGGACGAGTTCAAAGAGGCAGCAAAGAGCGACCCTTCCATTGTATTACTCCTGCAGTGTGACCTGCAGAAATAGAGGAGAAGGGGAGCTTGAGAACCGCCACAGACTGCACAGAAGATTCATGTTCCATTCAGTTTGCAGCTATTTCCACGGGAAAAAAATATGCTTGGACTACCTTTCAATGGATCCGCTTCTTGATGTTTGAAACACTTGTGTGCATGAGAATGTTATTTGCTAGAAACAATTTAtacgtacatatacacacacacacataacgagCTACACACACCCCACAAGATACAAACAAACTGCACACTCACTACACATTCACAATACGCACAAATATacagatatataaatattatatttcAATGACTGCCAAAATGTGAAGTGTGCAAAGTATTTTCCATACACTCATTCCACTGGAGCATCAGCGATGTGCTATGTTGAATTACGCTACAACTTATTATTCTGAGTTTACTGGCGCTAGCTACGTGTTTCATATATTGAGCAATGTCAGCCAAGTCAAATTCCTATGGTAACGTAACTGTTTCTGACAAACCAAGTATCTATTCTTCTAAAAGATTAGATTTGGATAGATAAAAGAGATGGATTGGTAGCCTATTCATCACAAACGTTTTCCTTCCAAATGTGCTTGTACTGTCGGTGAATATAAATTCATTTGCATGCCTTTAGGTTTTGCCTTAAAAATAATCTCCTTATTTTGCATCCTATAAGAATAACGAAGACAAAGCTTGTCAACGAAATGCCGTTAAACAGTTAAACATCCAATATTTGAATATGAAAAGCATATGACGGTATAGGTCACAAGTATTGATGAATGGGATGTAATTGTTTGTGATTTGTCAAGACATTATTTTTGTGGGAGCATGTTCCTTGTAGATAATAATAgttcataataataatagtaaacaTACCCCTATTTAAAATCTACCATCTCATGAGAACCATTTTGAATGAGGAGATATTGAATGTGGCATATTTAACGACAAAACCAAAAGTCTGTATGAATACAAGAAAAATATTTGGCTGAATTGGACCGAAAGAAATTAAATACACTGAAATAAAACCACCTCATCAGTATTGTCGGAGGAAGTATAGCTTATGAGGCATAACTAATGAGAGGCAATGTGACATCTATCTGAAAATGAGCTCAGCTCAATAACAATGTAGAGGTTTGAAGTGCATTTTATCCTACATATTATTGTTCCACTTAGTTTTGGTCTATGTCATCACACCATCTCTTCAATGAAGATACAGGTTGCATATCAATGTGCTGAATTCAATGAAGTTCCTGTCATGACTTTATTAATACCACTCATAGATATGAGGAAATTATCTAAGGCCAGAGCGACGTTGTGTTAGACATTGATTGATATTATCTCATACTGTTTGTCTCTTTCAGTTTAAAAAAGGAGTGTAAAAAAGGAACAATGTGTTGAAAGAACAAAGTGAATGCCATTCTTTATGAACCAAGCCAAGAGGACAAAAACCCTTCATGTTTTGGTAGGCTATAGTTTGCCCAATGTGTACCCAACGACGCGCTCCTCTTTCTTTTTTATTCCCCTCATTGAAGCACACACTGTATAGTAGTTCCTTTTTAGGTGCAGTGTATCCTGTCCTCCCATAAAGACAACTGCTTAGAAATAGCCCGAGACCcctggcctggtcccagatcggtttgTGCCATCTTGTCACGGCGCGACattggagttggcaagacagcacaaacagattcGGCTACAGGCTATTAGACCCCAGCTTGACTGGAAATATTAAGTAATTCACCTGTACACCTTCGTTGTCCCGGTACTGTGGATCTGTCTCCGTACGATGGTCACACGCAATCTCACAGACAGCTCTGGCCCGATTTGGACGAAACTTGGGTGAATAAtgcgtcttgccatagagatccagCGTTTACTAAATTACACCGATTGGCCCAAGGCAGGCGCTATAGTAATTAACAGAAATGTGTTTGTCACACGATCCCAATCGGCCCAAGGAAGGGCGCTGTATCATTGGTGGGGGaggacatgtttactgttgccttgttgaAAGATTGCAGACACTGCTTATATAAATCACTAGTTTTTGTTTCACATCTCATCTGCACATTTGGGAGGAGTTATTTGattcatttattttcaaattTACTGCGATAGGAAGACTAAGTCCACCATCATTCCTCAATAAATTAGGCTGACCGTCTGTAAATCTGAAACTTCACATGAACATCTTCGCCCAGAAATGCTTGTACTTATAACTATTATTAATCCGATACCAAATGTAAGCAAAGGCAACAGTGTCAACTGAAGGATTATTTTGTACATGTAGCATGTATTGTGTCCCCGATAACATGGCTGCACTACTCGTGTTGTGATTTAAACTAATAAAATAACTATGGTCTGTT

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K19936 VSNL1; visinin-like protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU795397 lncRNA downstream 60786 33421436 ~ 33424015 (-) True G698986
TU795399 lncRNA downstream 73370 33409813 ~ 33411431 (-) False LOC110529824
TU795400 lncRNA downstream 73370 33409813 ~ 33411431 (-) True LOC110529824
TU795143 lncRNA downstream 209849 33274665 ~ 33274952 (-) True G698742
TU795130 lncRNA downstream 217652 33266871 ~ 33267149 (-) True G698729
TU795509 lncRNA upstream 37111 33586419 ~ 33586673 (-) True G699093
TU795744 lncRNA upstream 72370 33621678 ~ 33622113 (-) True G699309
TU795747 lncRNA upstream 76931 33626239 ~ 33626569 (-) True G699311
TU795765 lncRNA upstream 98128 33647436 ~ 33647645 (-) True G699323
TU795766 lncRNA upstream 98400 33647708 ~ 33647983 (-) True G699324
XM_021612386.2 mRNA downstream 26329 33454287 ~ 33458472 (-) True LOC110529827
XM_021612383.2 mRNA downstream 48924 33426517 ~ 33435877 (-) True ints9
XR_005052862.1 mRNA downstream 71792 33409803 ~ 33413009 (-) False LOC110529824
XR_005052860.1 mRNA downstream 73271 33409803 ~ 33411530 (-) False LOC110529824
XR_005052861.1 mRNA downstream 73395 33409803 ~ 33411406 (-) False LOC110529824
XM_021612410.2 mRNA upstream 136061 33685369 ~ 33689052 (-) True LOC110529832
XM_036985352.1 mRNA upstream 170066 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985353.1 mRNA upstream 170066 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985354.1 mRNA upstream 170066 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985355.1 mRNA upstream 170066 33719374 ~ 33822238 (-) False cdc42bpab
TU794745 other downstream 494740 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 985391 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 1267252 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 1267252 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 1805066 31657726 ~ 31679735 (-) True LOC110529793
TU795919 other upstream 393714 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 473983 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 2033690 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 2092047 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 2092047 35641355 ~ 35687465 (-) False LOC110529865

Expression Profile