RNA id: XM_036985352.1


Basic Information

Item Value
RNA id XM_036985352.1
length 8906
RNA type mRNA
GC content 0.51
exon number 42
gene id cdc42bpab
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33719374 ~ 33822238 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCACCAGACTACAGTTCGAATCATGTCGGGAGAGGTCCGTTTGAAGAAACTGGAAAAGCTGATCCTGGACGGCCCAGCTCAGTCAAATGGCCAATGCCTTAGTGTGGAAACGCTATTGGATATCCTTATCTGCCTTTATGATGAGTGCAACAACTCACCCCTCAGAAGAGAGAAAAACATATTGGAGTTTCTAGATTGGGcCAAACCCTTCACTTCCCAGGTGAAACAGATGCGCCTGCACAAAGAGGACTTTGAGATCCTCAAGGTGATTGGACGAGGAGCCTTTGGAGAGgttGCTGTGGTCAAAGTGAAGAATGCAGACAAGGTGTTTGCCATGAAGATCCTTAACAAGTGGGAGATGCTGAAGAGAGCAGAGaCGGCGTGTTTCCGGGAGGAGCGGGACGTGCTGGTGAACGGGGACAGCCAGTGGATCACCACCCTGCACTACGCCTTCCAGGATGACAACAACCTGTATCTGGTGATGGATTATTATGTGGGTGGGGACCTGCTCACCCTGCTTAGTAAGTTTGAAGACCGGTTGCCGGAGGACATGGCTAGATTCTACCTAGCTGAGATGGTGCTGGCTATTGACTCAGTGCACCAACTGCACTATGTCCAcagggaCATCAAGCCAGACAACATCCTGATGGACATGAACGGCCACATCCGCTTGGCGGACTTCGGCTCCTGCCTGAAACTCATGGAGGACGGCACGGTCCAGTCGTCGGTTGCCGTGGGGACCCCGGACTACATCTCTCCGGAGATCCTGCAGGCGATGGAGGATGGGAAGGGGAAGTATGGTCCTGAGTGTGACTGGTGGTCCCTGGGCGTGTGCATGTACGAGATGCTGTATGGGGAGACCCCCTTCTACGCAGAGTCATTGGTGGAGACCTATGGCAAGATCATGAACCACAAGGAGGAGTTAGGTGCTGCTGAGCGTTTCCAGTTCCCCCTGCAGATGACGGACGTGTCCGAAGAGGCCAAGGACCTTATCCGGCGCCTCATCTGCAGCCGTGAGCACCGCCTGGGCCAGAACGGCATTGAGGACTTCAAATCTCACCCCTTCTTCTCTGGCATCGACTGGGACAACATCCGTACGTGCGAGGCCCCTTACATACCAGAAGTCAGCAGCCCCACAGACACGTCCAACTTTGACGTGGACGACGACTGTCTCAAGAACTCGGAGACGAtgccccctccctctcacacGGCCTTCTCTGGACACCACCTGCCCTTCGTAGGCTTCACCTACACCAGTAAATGTACCCTATCTGACCGGGGCTGTTTGAGGGAGTCGGGAGGTTCGGGTCCGGCACAGATGGATGTGTGTGTCCAGCGCAGTCTGGAGGAGAGTCTAGCTACCGAGGCCTACGAGAGGAGGATACGACGCCTGGAGCAGGAGAAGACTGAGCTCAGCCGCAAGCTgctagAGTCGACCCAGACAGTCCAGGCCCTGCAGCACGCGCCAGGAGAAGGACCAGCATCCGTCCCCTCTAACAAGGAGGTGGAGATCAGGAGTCTGAAGACTGAGATTGACATCCTCAAGAAACAGATCGCAGACTCGGGTCAACTGGAGCAGAAGTTGGAGGAAGCTACATCAGCCCGTCGAGAAATGGAGGGCTCATCCAAACACATCAGGAGCCTGGAGAAACAGATGAAGAGCCTCAACCTGGAGAGGGACGACCTGCAcaagGACTTAATGGAGGCCAGTGAGAAGATGAAGAGTCAGTCTAAGGAGTTGAAAGAAGCCCACAGCCAGAGGAAGCTGGCCATGCAGGAGTTCTCCGAGCTCAACGAGCGTTTGACTGACCTTCGATCAGCCAAGCAGCGCCTGGGCCGTCAGCTCcgggacaaggaggaggagatggagggtttGTCCCAGAAGGTGGAGGCTCTACGGCTGGAGGTGCGCAAGGCCGAGAGGTCCAAGAAGGAGATGGAGGCCCAGTCTGAGGAGCAGACAGCAGACGCTCAGAAGGAGAGGAAGCTGAGAGAACGATCAGAGCAGCACTGCAGACAGCTTGAGGAGGAGCTGGACGGActcaagAAGCAGGTGGGACCGTCCGCTTCGGTGGTGGGCTCGGACCAGAGCCAGGAAGTGGGGAAGCTGCGTGCCGACCTGGAGAAGAAGACCTTGTTCTACGAGGAGGAGCTGAGCAGGAGGGAGGCGCAGCACGCCAACGAACTCAAGGGTCTCCGCAAGGAGCTCCGCGACGCTGAGGGACAGCAGCTCACCCTGCAGAAGGAGATCCTGGTGCTCAAGGACAAACTGGAGAAGACGCGCAGGGAGagcCAAAGTGAGCGTGAGGAGTTTGAGACGGAGTACAAGCAGAAGTACGAGAGGGAGAGGGTCATTTTGACCGAGGAGAACAAGAAGCTCTCCAGTGAACTGGACAAGCTGACGTCCATGTTTGAGAAGCTGAGCAGCAGCAACAGAcagctggaggaggagatgagggagctGGCTGACAAGAAGGAGAGCGTTGCTCACTGGGAGGCCCAGATCACTGAGATCATACAGTGGGTGAGCGATGAGAAGGATGCGCGAGGTTACCTCCAGGCTCTGGCCACTAAGATGACTGAGGAGCTGGAGGGACTGAGAAACACCAGCCTAGGTGCCAGGGCCACGcaggacatGCCGTGGAAGGTGCGGAGGTTCGCTAAGCTGGACATGTCAGCCCGTCTGGAGCTGCAGTCTGCACTGGACGCTGAGATCAGAGCCAAGCAGACCATCCAGGACGAACTGAACAAAGTCAAGGCCTCGAACATCTCCACTGAGTGtaAGCTGCAGGAGTCGGACACTAAGAACCAGGACCTGCTAGCTGAGATTGAGAGGCTGAAGAAGGAGACGGAGGAGCTCCGCCTGCGCAGGGGTGTGAAGCACCAGGACTCCCAGAACTCTTTTCTGGCCTTCCTCAACGCCCCCACCACAGCCTTGGACCAGTTCGATCGCTCTCCATCCGTTGGGCCAACTAGCAAAGGCAGACGTGTGGACTCGGTGGACAACTTCACTCCCTCCAACACTCCATCCAGAGGCGAGGACTCCAAGTCCCAGCTCAAGTCACGCTCACGGTCGCCCTCCATGGCCAGCGACGTGGAGCCTATAGAGTTGATAGACCACCCCCCACGGCCGGTCCAGACCGCCACCATGCGGTCAGGAGGGTATGGTAGTATTGGCCGCTCATCACCCAAGCCCAAAGCCCACCAGTTTGTGGTGAAGTCCTTCAGTGCTCCAACCAAGTGTAACCAGTGCACCTCTCTCATGGTGGGACTCATCCGCCAGGGCTGCACCTGCGAAGTGTGTAACTTCTCGTGCCACGTGACATGTGCTGACAAGGCTCCAGCAGTGTGCCCCGTGCCACACGACCAGACCAAGGGGCCATTGGGCATTGACCCTCAGAGGGGCATCGGCACTGCCTACGAGGGACACGTCAGAgtgcCCAAGCCAACGGGGGTGAAGAAGGGTTGGCAGCGGGCGGTTGCCGTAGTGTGTGACTTCAAGCTCTTCCTGTATGAGCTTGGAGAGGGCAAGGCCACGACGCCCAGTGTGGTGGTCAGTCAGGTCATAGACATGAGGGATGAGGAGTTTTCAGTCAGCTCTGTTCTGGCGTCTGACGTCATTCACGCCAGCCGCAAGGACATCCCATGTATATTCAGGGTGACTGCTGCCCAGCTGTCCGCCTCCTCCAGTCACAAGCCTTCCATCCTGATCCTGGCCGACACCGACCACGAGAGGAACAAGTGGGTGGGGCTTCTCAACGAGCTACAGCGCATCCTCAAGAAGAACAAGCTGAAGGAGCGCTTTGTCTACGTGCCCAAAGAGGCCTACGACAGCACGCTGCCGCTCATCAAGACCACGCAGTCCGCCGCTATTATAGACCACGAGCGTGTTGCCCTGGGCAACGAGGAAGGCCTTTATGTTATCCATGTCACCAAAGATGAGATCATCCGCGTGGGAGACAATAAGAAGGTCTACCACATCGACCTGGTCCCCCAGGAGCAGCTCCTAGCAGTCATCTCCGGTCGTAACCGCCACGTCCGCCTCTTCCCCATGGCCGCGCTGGACGGACGGGAGATGGACTCTTACAAGCTGGCCGAGACCAAGGGCTGCACAGCGCTGGTGTCCGGGCCCGTCCGAAACAACTCcctcatctgtctgtgtgtggccaTGAAGAGACAGGTCATCTGTTACGAGGTGAACAAGAGCAAGGCGCGCCACCGCCGGCTGCGGGAGCTCCAAACCCCAGGTCCTGTCCAGTGGATGGGTCTCCTGAGCGAGCGGTTGTGTGTGGGCTACCAGGCTGGCTTCACGCGCTACAGCGTGCACGGGGACTGTGCCCCGGTCAGCCTGCTGCACCCCGAGGACCACACCCTGGCCTTCATATCCCAGCAGGGCCTGGATGCGTTGTGTGCCGTGGAGATCTCCTCCAAGGAGCTGCTGCTATGCTTCTCAGCCATAGGGGTCTATGTGGACTCGCAGGGCCGCCGCTCGCGCCAGCAGGAGCTGATGTGGCCGGCCGTGCCCAACTCCGCCTgTTATAACGCCCCCTACCTGTCAGTGTACAGTGAGAATGCTGTGGATGTGTTTGATGTCAACACAATGGAGTGGATTCAGACCGTCCCACTAAAGAAGGTGCGACCTCTGAACCCTGACGGATCCCTGAACCTCCTGGGTCTGGAGACCGTGAGGCTCATCTACTTCCGAAACAAGACGGCAGAGGGTGATGAGCTGGTGGTCCCCGAGACTTCTGACAACAGCAGGAAGCAGATGGTTCGCAGCTTGAACAACAAGAGACGCTTCTATTTCAGAGTCCCCGAAGAGGAGCGGCTACAGCAGAGGAGGGAGATGCTGAGAGACCCAGAGATGAGGAACAAGCTGATCTCCAACCCCACCAACTTCAACCACGTGGCCCACATGGGACCTGGGGACGGCATCCAGATCCTCAAAGACCTGCCCATGAACGTGCGTGTTCAGGAGAGTCGTGCTGCAGGCTTCAGTGGCTCCGTGTCCATCCCCTCCATCACCAAGAACAGAGCCGAGCCGGGACGGTCCATGAGCGCCAGCAGTGGACTGGGCATCCGTTCGTCATCTCAGAACGGCAATGCGTTGAGGAGAGAGCTGTCCGGGGGTAGCTACAGCTCTAAGCGCCAGACCATGACCTCTCCCTCCGAGAGCTCCTTGTCCTCCGGAGGGGGTATGGACGGCTGCAGCGACGCACCCCTCTCCCAGTTCGACAGAGAGTGGCAGGCGGTCTCACCATCGGAGAAGACCCCCGATCTGAAAAGGGCTTTAAGGACCCTGCTTAGTAAGATGAAGgaCTCTGACTCACCCCGTCACTCGACGGCGTCCAACAGTTCTACGTTCAGCAGTCCCCCCAGCCCGGCCTCACCCCACAAGACCAAGTCCCTCTCACTGGAGAGCACAGACCGCATGAGTGGCTGGGACACATGAGTGACAGACCGCACACAGCTCCATTCCCTGACCCTCACCAAGCTCCTGGGCCCGCCCCCCTTCCCGGGCCCTGCCCACGGAACTGTACCCGCTGCCACAGGGAAAGGAAGTGTTTGACCAAGAGGGAAATACtgggaaagggtgtgtgtgtgcgcgtgtgtgtgtgtgtgtgtgtgctcgtgtttgtgtgtgtgtgtttttgagggAGGGCATACAATATAGGAATTAAAATGTACACCCCCTTTCATCTGCTTTGTAGCTGATAACCAGAATAAGCGAAGCGCTGAGTTTTATTGAGAGTACTTTTGATTGCAGCACTACTAGCCCCGTATAGATTATTATGTCATTGGCAACTCCTGTAAAAAGACACACAAACCTCAAGACGCGACAAAGAGAAGAGGATCAATATGAAACAACAGATCATTTGATACGTGTACATAGCACCCTTTGGGCTTGGGGGGTGGCCACCTTTTATTTATTCATCTATCTATCGAAGACATGGAGAGCAAGGTGCTTTGCagctagaggagaaagagaggatgttttcactctctctttttccttctgTTGCTTTCTTCCAAAACGGTAGTTGGCAGCAGGAGAAGAGGGGAATTCCATTTTACAATACAAGGCTcacaaaataacatttaaaaaaatgaagaaaaaaagaaagcaattatgtattttttattttatttttttgctcatgAAGTGAAATATGTGCCGTGACTTAATGTCTTCGTACCATCAGCGAAAAGCTACAGTAAAGCAGTACAAAAATACAAGTATGGTTAGGGGTATTTTAACTCTAGGTGACACCTCGCTGGCTTCATGTTCTCGAATTCTTAGGGACAGCGGTGTTTTAGAAGCAGACTGAACATTCAATGATGACATCACAGCTCCTTATGCGACTTCCTCATGACATGGGCCAGTGACCTCATCCAGTGATCTGGGACCATTTTCCATGTAGTGTAGACCTAGTACTGTAAGTGCAGTAATAGACCAACCACCGATCAATTCCAAAAAGCCAATTCCCATCACAACCATGTACATAGGTTAAAATCAGAGAATAATATATGATAAGGGAATTACTATAGAGAAATAGATGATGGGGAGAAGATCCTCGATTCCTGTTTATCTTTTGAGTATGATTTGGGGTGATATCCGCACGAAAGCCATTTTAAACCACTTCAAGTTCCTCTGATTTTGCTTTTagatttgttttagtttttttctttCTATTTCATATATGAGACACAAACTGTCAAGTGTCATTTTGATTTGCGTTTGAGGAAACTAATATTAAGGGTCGCATGGACCCCGTGCTGTTAAGTGAATATGTGCATTTATTTGAAGCGATCGTCTTGTCACAGATGCATGCGTtcacactcacatgcacaaacacacacacacacacgcgcgcgcgagcgagcgaacacacacacacacacacacacggccgttTCCCCCGCCACTCTTTCCACTATGGTCCACAGTTGGATCAGTTTGAGGTGGGATTGCATCTTTCCTAACTGAAAGTGATTCTGAAACACTTAAGTGTGTATTTCCATACTTTTCTCTGTGGTACCAACGTGTGAACCTCAAATATGTTGTATCCTTTGACTTCCGAGAGAGATTTTGGAAAGCTTGTTATAACCAAAAATAGAATGACTTGGAATCTTGAGTCTTCGTTCTTTTTCAGACAGCCTTGCTTATTTTGAAGAATGTTTTGATaggttatggggggggggggacaattgtAGATGTCGATTtgactagacagacagacagcgctAGGCTGAAATGGGGGGTCAAAAAAGAGTGAAATAACGGAAAAGAAATGCTAAGATGACAAGTTCAATGTTTAATTTCTGTTCCAATCCTCCCTGCTGTCATTGATATGTTCTTACTATTAACTGGTAAGCTGTATATTACTGTCTGGTAATGCAATAACCTTGATACAAGCCACAaattggggtcaattccatttttcTTTTGTCAATTCAAGTTCCATTCCAATTTTCCTCAATGCTTCTTTGTGACAAATTTGGAATTAGAATTtctgtttactttctgaattgccTACATTGAAATGGACCCCAACCCTAATGCAAATCACAGCAtggtgttgttgatgtgtattTATATGTGGAAATGAAACAAGCTTTGGGTCGAGTGCCTAGATCAGCTGACTCTTCTCTCTCAAGCGGAAGGGAGGGGACTCTTATTCTGGAAAGGGgactttttttttcatttctaATGAGGAATTATTTTTATGTTCCAGACCGTTTTAATGAATGACCGTTGTTACTTACTGTTCAAAGGGACCTTCTGTCTTAAGGTTTAGGAGTGTTGAAGTGTACCAAGTAGTCAAACATGGCAGTTTATCGATCCTAGTCAGAAGTGTATAAAAATATAAGATTTCAGATTTCTGCTTTCATCCGTGCCATCGGGGGCCTAAACCTTCACCCTAAACCACAGTTCTATTATATTCCCTTGAAAATACAGTCATTTATCTCTAGGCTACTCATTCCACGTGTTTTTAGAATTCCATTTTATATTGAGCTTTTGCAAAATAAGAATTTTGCCTTTAGACGTCAGTCTCGCTAAGTTGGTTTTACTCAACCGTCTCAACTTAACCACCTCTCTTACGATTTCCTTTTAACGCTACCAAGAGTCTCTATTCATATCTGCTGGGCCGTGTCTGTAGAATGTATTAGCTGAGAGCGAAGAGGAAATATCTTAGTCTGAGAGTATGATAGACCAGGCTTTATACTGTATAGTTAAAGGCCCGAAAtcccactttaaaaaaaataaattacaaaaaaaaaactcaGGAATGTCAGAACCAATGATTATTTTCACCCTAACAATGGAAGTGAGTGTGACAGAACAGACTACACTTGGGAAAGAAGAGCTACATTTAGCCGTAGTGTAGCCAGCTGTGACTAGGCGTAAGGGTCTAAAGATTCAGGTGGAAGAAAAGACGGATACACGGAGGAAGAACTCAGACAAGTGTTTTGAATTAAGGATGAAAAGGGGTGAAGGAGCAGATGGAGGGGTAGTAGTTTGAGGCTGAGGTGTCACCATGATAACCAttaaaaaatatttcaaaaaacgCCTTTGCATTTCAGTGAGGTCTTATCTTCAGTTCCTTCTATATTATTTTGTTCTTTCATATCATATTATACACCTTGTTTTTCTAGGATTGCTTTGTAATAATTTGTACAGTTTTGCATGTTATAGATGTAATCATTTTATTTGAACGGTTTTGGGGAGTTTTATTGAGGATACCCACTACAGGTGATGTAGATTCTTTTTGCACAGAAATATTTAAGGTGTAAGGTCAAACAAATAATGTATGGAAACTGGCCACCACACTTGTGGAGAACTCATTATATTAACCTGACTCCAATGTATTTCAATAAAGCAGAGGGCTGTTACAAATACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU795760 lncRNA downstream 35404 33680741 ~ 33683970 (-) True G699319
TU795768 lncRNA downstream 69545 33649603 ~ 33649829 (-) True G699326
TU795766 lncRNA downstream 71391 33647708 ~ 33647983 (-) True G699324
TU795765 lncRNA downstream 71729 33647436 ~ 33647645 (-) True G699323
TU795747 lncRNA downstream 92805 33626239 ~ 33626569 (-) True G699311
TU795875 lncRNA upstream 1835 33824073 ~ 33824422 (-) True G699427
TU795877 lncRNA upstream 4181 33826419 ~ 33826658 (-) True G699429
TU795878 lncRNA upstream 5522 33827760 ~ 33827995 (-) True G699430
TU795879 lncRNA upstream 5886 33828124 ~ 33828678 (-) True G699431
TU795884 lncRNA upstream 28397 33850635 ~ 33850889 (-) True G699436
XM_021612410.2 mRNA downstream 30322 33685369 ~ 33689052 (-) True LOC110529832
XM_021612387.2 mRNA downstream 170066 33484801 ~ 33549308 (-) True LOC110529828
XM_021612386.2 mRNA downstream 260902 33454287 ~ 33458472 (-) True LOC110529827
XM_021612383.2 mRNA downstream 283497 33426517 ~ 33435877 (-) True ints9
XR_005052862.1 mRNA downstream 306365 33409803 ~ 33413009 (-) False LOC110529824
XM_021612425.2 mRNA upstream 9434 33831672 ~ 33841602 (-) True LOC110529836
XM_036985370.1 mRNA upstream 153250 33975488 ~ 34009371 (-) False LOC110529840
XM_036985371.1 mRNA upstream 153250 33975488 ~ 34009377 (-) True LOC110529840
XM_036985372.1 mRNA upstream 194772 34017010 ~ 34029131 (-) False ankef1a
XM_021612441.2 mRNA upstream 314320 34136558 ~ 34157637 (-) True LOC110529846
TU794745 other downstream 729313 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 1219964 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 1501825 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 1501825 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 2039639 31657726 ~ 31679735 (-) True LOC110529793
TU795919 other upstream 120784 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 201053 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 1760760 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 1819117 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 1819117 35641355 ~ 35687465 (-) False LOC110529865

Expression Profile