RNA id: XM_021612425.2


Basic Information

Item Value
RNA id XM_021612425.2
length 3303
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC110529836
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33831672 ~ 33841602 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCTCGCTTTGGCGCCCACAACCCCTTCTGCCAGTGAAAAGGACTATTAACGCTACTGCCATTTGGCGCAGTTAAAAATACGTGAACTTGCATAGCGTCCTTTACAAAATTTCCCGTCTTTGTTGTAATTTTACTTTATTTTAACAGCGTGGTTCAGTTTAGtgttttatacatttttcaaaatgAGTTCAATTAACGTAAAAAAACTGAAAGTAAACGAGTTGAAGGACGAGCTGAAAAAGCGTCAGCTGTCGGACAAGGGGTTGAAGGCCGAGTTGATGGACCGTTTGCAGGCCGCGCTTGACGAAGAGGCCCTGGCTGGAGATTCTCCCCTTGGGCTGGAGGCCGCGGAGGGAGGCTTTCCCGAGGGAGACGACGACGCCGCCGCCGCTGCTGATGACCAAGAGGACATGGGGGAAGATGAAGAAGACGAGGGCCCCGTCGTTGAAAGCATGGATGCCAACGAGGAGGAAGAGAATGGAAACGGAGAGGGAGACGCCGCTGTCGTGAACCAATGCGAGGAGGAAGAGAACGCGGCCCAGGAGGACGACGAAATGGGTGAGGTAGAAGAGGAAGAAATGGATCCAATGCTGAAGGAAGGTGTGGACGACATGGAGAAAATTACATTGGACGCAGAAGATGGTGAGCCTGGAGACCATCCAGCAGAGGGGGATGCGGACAAAGACACGAATGCTGATCAGAAGAATAAGAAGGGTGTTAAGAGACGCCGGGAGGAACATGGAAGGGGCTACTTTGAATTTATTGAAGAGAACAAATACAGCTGGCCTAGTCTCAAGTCTCCACTGCCACCcctggaggaggaagatgaggagttTGATGATACAACAGTCTGCCTGGACAACTATAACTGCGACCTGCACTTCAAGGTGTCCCGGGACCGCTACAGCGCCTCCTCTCTCACCATGGAGAGCTTTGCCTACCTGTGGTCCGGGGGCAGAGCCTCATACGGGCTGTCCCAGGGCAAGGCCTGCTACGAGATGAAGATAACTGAGAAAATCCCAGTGAAACACATATCCAGTAAGAACATGGACATCCATGAGGTCCAGGTTGGATGGTCCCTAGCTACTGGCAGTCTGCTCCTTGGTGAGGAGGAGCATTCCTATGCCTACTCTGGCAAAGGCAAGAAAACCACCAATTGCGTGACTGAAGATTTCGGGGAGACTTATGATGAGAATGACGTCATCTGCTGCCTCATTAACTTTGAAGGTGAGGAGGTGGAGATGTCCTTTTCTAAGAACGGTAATGAGCCAGTGGTGGCCTTCCAGGCCAGTAAGGAGTCCCTAGTAGGAAAAGCGCTCTTCCCCCACGTCATCTGCCACAATTGTGCAGTGGAGTTTAACTTTGGCCAGATGGACACGCCCTACTTCCCCCAGCCAGAGGGCTACACCTTCCTGCAGCAGGTCACCATGGAGGACCGTGTCCGCGGACCCAAGGCACCTGACACCAAGAAGGACTGCGAGGTGATTGCCATGGTGGGCCTGCCTGGCTCAGGAAAGAGCACCTGGGTCAACAAGCACATCCAGGAGAACCCCGGGAAATATTACATCCTGGGCAGCGACACCATCGTGGAGAAGATGATGATTGGCAGTTTGAAGCGTCAGGCGAAGGACACAACAAAGCTCACGGCCATTTCCCAGCGTGCACCTCTCTTCCTGGGCAAGTTCATTGAGATCGCTGCTCGCAAAAAGAGGAACTATATCCTGGACCACACCAACCTGTCTGCCCCGGGCCAAAAGAGGAAGATGTGTCTATTTGCTGGGTACCAGCGGAAGGCTGTGGTGGTCTGTCCCTCAGACGACGACTACAAGGAGAGAGCCCAGAAGAAGGCCGAGAGCGACGGGAAAGACGTGCCCGAGCACGCTCTCCTCAAAATGAAAGGATTCTTCACCCTGCCAGAGGAAGGTGAGAGCTTCGCTGTGGTGAGCTACGCTGAGCTGCAGAAGGAGGATGCTGCCAAGCTGGTGGAGCAGTACAAGGAGGAGAGCAAGGCGGCCCTGCCGGCTGAGAAGAAGCCCAACCAGGGGTCTTTGACCCccaagagaggaggagggagtgtcCGGGGGGGAGGCAGAGGCAAGAACCAGTTCAACCGTGGAGGTGGACCTGGCCAGAGAGGAGGTGGACGAGGTGGCTTCCAGCAGAGAGGCAACTTCCGAGGAGCTCCAGGCCCACGTGGTGGGTTCACTCGCCCCCCTAGAGGGTTCATGCCCCCTCCAGCCTTCAGAGGTGGATTCGCCAACCGGGGCAACTTCAACAGGGGCGGCGCCCTCATGGCTCCCCAAGGAGGGTCCCCAAGAGGGGGACCGATGAGGGGCCACAGGGGTGGAGCCATGAACAGAGGTGGTCCTCCAATGAGCCGAGGGGGCGGCGGTCACATGAGCCGAGGGGGCGGCGGTCACATGAGCCGAGGGGGCGGCGGTCACATGAGCCGAGGGGGCGGCGGTCACAGGGGCAACTTCAACCAGGGGTTCCAGCCCAGAGCAGGCAACAGCCGTGGGAATTTTGGCAACAAGAATGGCAGCGGTGGGTTTGGGGGCGGCAGGAATGGTGGAGGACGTGGTGGCGGATTTGGAGACAACAGGACTGGTGGAGGATTTGGCATGGACAAGGCTCAGGCCTTCAACCAGAGCTGGCAGCAAGGGTTTTggaaccagaagccatggagcCAGCAGTATCAGCCAGGATACTATTAAAGACTTTCTGATCAAAAGGACTGGTGGCCATTAATGGTAACCAACCACTAGCCACGGACCCCCTGCCCCACCCCTCCCGTTTTTTCTAGAACCCACTTTTTAAATTGAAAACAAAAAACGCAAGCCGATGGAGCAACATTCCACATCCGAGGAGAGGAGTCTCTGAAGCTTTATGGGTTTTTCCATTTGATTTTGTACATTTTATGATCCCCACATTTTAAAGAAATCACatgcttttaaaaaaaatcccATGTTTGAGAAACATACCACATCACGAACCGCAACATTTTCCCTCTGCTTCAGTGACATTTTCAGGGTTGTGCATTTTCTgtgtaatgtttttattttttatttttacaaaatgtAAATATTGTCTTGCGTAGTTATGTTTGTATAAGAAGTGAGAACACTTAGTTCCTTTCGGTTATTATCTTATGAGAGGCATGGTAGCTATAGTATTGTTAGTGATTTGTATATGTAGTCCATAAGCAACAAACAGTAATTTGTTATTTTTAATTAAAACATCAAGCATGTAATCTAAACTCCGTAGATTTACAATAAACAACCTATTTGCTTTTTGCAGAAGTC

Function

GO: NA

KEGG:

id description
K12888 HNRNPU; heterogeneous nuclear ribonucleoprotein U

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU795879 lncRNA downstream 2994 33828124 ~ 33828678 (-) True G699431
TU795878 lncRNA downstream 3677 33827760 ~ 33827995 (-) True G699430
TU795877 lncRNA downstream 5014 33826419 ~ 33826658 (-) True G699429
TU795875 lncRNA downstream 7250 33824073 ~ 33824422 (-) True G699427
TU795827 lncRNA downstream 43255 33757774 ~ 33788417 (-) True G699381
TU795884 lncRNA upstream 9033 33850635 ~ 33850889 (-) True G699436
TU795892 lncRNA upstream 19663 33861265 ~ 33861485 (-) True G699443
TU795894 lncRNA upstream 26141 33867743 ~ 33868222 (-) True G699445
TU795899 lncRNA upstream 30053 33871655 ~ 33871859 (-) True G699450
TU795900 lncRNA upstream 30300 33871902 ~ 33872117 (-) True G699451
XM_036985352.1 mRNA downstream 9434 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985353.1 mRNA downstream 9434 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985354.1 mRNA downstream 9434 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985355.1 mRNA downstream 9434 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985356.1 mRNA downstream 9434 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985370.1 mRNA upstream 133886 33975488 ~ 34009371 (-) False LOC110529840
XM_036985371.1 mRNA upstream 133886 33975488 ~ 34009377 (-) True LOC110529840
XM_036985372.1 mRNA upstream 175408 34017010 ~ 34029131 (-) False ankef1a
XM_021612441.2 mRNA upstream 294956 34136558 ~ 34157637 (-) True LOC110529846
XR_005052864.1 mRNA upstream 413913 34255515 ~ 34257262 (-) True LOC110529843
TU794745 other downstream 841611 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 1332262 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 1614123 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 1614123 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 2151937 31657726 ~ 31679735 (-) True LOC110529793
TU795919 other upstream 101420 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 181689 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 1741396 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 1799753 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 1799753 35641355 ~ 35687465 (-) False LOC110529865

Expression Profile