RNA id: XM_036985370.1


Basic Information

Item Value
RNA id XM_036985370.1
length 2197
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110529840
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33975488 ~ 34009377 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCAAGCATGTGTACATCTATTATGTTATCTATTTCTCACGATAAAGCCACAAACGTAATACTAAACAATACTGGTTTTGATGAAGAAAATGTCTAGACTCTACGGCTGAGATGTGACACCACGATTCGACACTGTGAACACATTCACATGCTTTTGTTTTGCCTAAAAATACATGGCGATTTCCATCGAGCCGTTACCGGTCCACGTGCAGCTTCCCATTTCCAACCCTGCAGAAGTGTGGATCTTTTTGACAGATATCGATTCAAAGCTGCTGACGTCAAAAGCATCCTCCATCTTTTACGATTGCAGAGATGCTGCTTTTCATTGAAGAAGAACTGAGGAGGTGTCAACCATGCGCACTGCCTTTGTGACAATCCAGTCATATCTGATATCTGTTAGTTGTTGAAATTTGTGGACATCTGCTCCTCCTGCTGACTGCAAGCCACCGACCACGGGCACAGCCTATCCCCGGCCTCCCATTAGAACCTACTCTTCCCCGTTGGAGACCAGCTCCACCACGCACAGCCAGCAGCTATGGCTGAAGACTTGGACATGCGCAACGAGCTGTCGGATATGCAGCAACGCGCCGACCAGCTTGGAGATGAGTCGCTGGAGAGCACTCGTCGTATGCTACAGCTGGTGGAAGAGAGTAAAGATGCTGGTATCAGGACTTTGGTTATGTTGGACGAGCAAGGAGAGCAACTGGAGCGCATCGAAGAGGGAATGGACCAAATCAATAAGGACATGAAGGATGCAGAAAAGAATTTGAACGATCTAGGAAAATTCTGTGGTATTTGCTCCTGCCCATGTAACAAgatgaAGAGTGGCGGCAGCAAGGCTTGGGGGAACAACCAGGATGGGGTGGTGGCCAGCCAGCCTGCCCGTGTGGTGGACGACCGCGAACAGATGGCCATCAGTGGAGGATTCGTTCGCAGGGTAACAGATGATGCCCGGGAAAATGAGATGGATGAGAACCTGGAACAGGTGGGAGGCATCATCGGTAACCTGCGCCACATGGCCCTGGATATGGGCAATGAGATCGACACCCAGAATCGACAGATTGACAGGATCATGGAAAAGGCTGATTCTAACAAGACCAGGATTGACGAAGCCAACCAACGGGCCACTAAGATGCTGGGCAGTGGCTAAGCTCCCAGAACATGTTGCTTTTCCCGCAATTGCAATTTATTGTCATGGTATTTACCTTCTAGGTTTGCACATGTGCACATATCACCTCCCCACATTGTAAATGTTGTTCTGTGCATCCTTTGTCTGGCTTTTTCAATGATTGTCCTCGTAAAATGAAATATTTCTTATCCTCTGTATCATTCTTTCCAAAGATTGTATACAGTGCTGACTCGATGGCTCTAGTTCACTTGTGAAGTTTTTATTCTCTTTATCAAATATAGtaaatacaggtaactgccaaaataaaggaaacacttgagtagaTTAGGGTTCTGGCGGCTCTGTTTTGCTGTGAGTGCATTTTCCTGGCATGATTTAGGTCCATTCAACCTCTTCGAGGGCAAGGTAAACAACAATAAATACACAGCCATTCTGAGAGATCACCTTCAACCTATGCTGAAGCATTTCTATTGTGATAGGAGTGGTCTCTttcaggatgacaatgcccccatccacagggcacgggTGGTCACTGAACgttttgatgagcatgaaaatgaaATAAACCATAttccatggccatctcagtcaccagttctcaacccaattgaacactgatgggagattctggagtggcgccttggaacagcgttttccaccatcgtcaacaaaacaacaaatgatggaatttcttgcggaagaatggtgtcgcatccctccaatagagttccggacacttgtagaatctatgccaaggcacacTGAAAATGTTCTGGTGGCTtgtggtggcccaatgccctacTATGATACTTTATGATGGAATTTCCTTTATTCTGACAGAtacctgtatatactgtataaggATACACTGCCAGATGACAAATATAATAGGAATGCTATACAAGCTGTTTCCCTTGTCAGTATCTCAGTATTGTCTTTGTAAAACTGTATCATTCCATCAGCTACTGTCATGCTCCTTATTTTGATGTTGTCATGACAAATGAAGAAGAGGGAAAAAAATACGATGATTACAAATTATAGTCAATTCAAAAAGCACTTAAGGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU795940 lncRNA downstream 6244 33968663 ~ 33969244 (-) True G699487
TU795939 lncRNA downstream 8061 33967135 ~ 33967427 (-) True G699486
TU795933 lncRNA downstream 16255 33959013 ~ 33959233 (-) True G699480
TU795932 lncRNA downstream 16632 33958571 ~ 33958856 (-) True G699479
TU795929 lncRNA downstream 19574 33955577 ~ 33955914 (-) True G699476
TU795945 lncRNA upstream 574 34009945 ~ 34010163 (-) True G699490
TU795970 lncRNA upstream 6548 34015919 ~ 34016237 (-) True G699515
TU795987 lncRNA upstream 8770 34018141 ~ 34018557 (-) True G699531
TU795993 lncRNA upstream 23850 34033221 ~ 34033456 (-) True G699537
TU796044 lncRNA upstream 100422 34109793 ~ 34110288 (-) True G699582
XM_021612425.2 mRNA downstream 133886 33831672 ~ 33841602 (-) True LOC110529836
XM_036985355.1 mRNA downstream 153250 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985372.1 mRNA upstream 7639 34017010 ~ 34029131 (-) False ankef1a
XM_021612441.2 mRNA upstream 127187 34136558 ~ 34157637 (-) True LOC110529846
XR_005052864.1 mRNA upstream 246144 34255515 ~ 34257262 (-) True LOC110529843
XM_021612449.2 mRNA upstream 535785 34545156 ~ 34550128 (-) True LOC110529848
XR_005052865.1 mRNA upstream 788474 34797845 ~ 34799304 (-) True LOC118965512
TU795919 other downstream 23132 33943022 ~ 33952356 (-) True G699468
TU794745 other downstream 985427 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 1476078 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 1757939 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 1757939 32214486 ~ 32217549 (-) True LOC110529804
TU795985 other upstream 13920 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 1573627 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 1631984 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 1631984 35641355 ~ 35687465 (-) False LOC110529865
TU798046 other upstream 1631984 35641355 ~ 35705313 (-) True LOC110529865

Expression Profile