RNA id: XM_036985372.1


Basic Information

Item Value
RNA id XM_036985372.1
length 3535
RNA type mRNA
GC content 0.50
exon number 10
gene id ankef1a
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 34017010 ~ 34029131 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGGATTATATGATAGCTCTACTTCACTGCGCTGCTGAACAACCCTGAATATTTGGAGATTACTTTTTGATTTTGAAGAGGGGAGGCAATATTCATCCTCTTTTACTCTCGCAGTCTGATCTTATTCCTTGGCTTTTGGTTTTACTCTTTTAAGACTGTGCTTGAGTGACAGGACTGACAAACACGATGTAAACTGATATTCGCAACGCCAGTGAAGTGCAACGAACCCGTAATTCTACCCACTTAAGAGCATAGCCATTGAGTAAAATAGAATGCGCGTTGCCTGCCAGCATTCAAGATGCCGGCAGTTATTCCTTGAGGCCCATCCTCTAGTGATTTTACCCGCATGTTCCGTTGCTATGGGAATTCTTTCCCACCCCTGCTCTCCAACAAAAGTCACAGGTTGTGCTTTGAAACAACAAACTATTCGGTCGATTACGCGTTAATTTCGCTCCAATGATTACTGGATTTGTCAACAAACTAACCACATAGAAATAGTTTCTGCAtgtgagattttttttaaagTATTTGACCCTGGTCTGGAACGAGAGCCCCTACTTGCCCACTGACCCATAATGAAGACCCCGGTGGCTGAGGGTCGCCTGCAGGTGCTGCAGATCTACCGGCTCCTCCAGTATGTCCATGAGGGAGACCAGCCTCAGATAGAGAAGATGGTAGACATGGGTGTGGAGGACCtcatcaacctgacagagccaCGGGAGGGCACCGGAGTTCTCCACCTGGCTGCTGTGGCCAACAACACAAACATGGTCAGCTTCCTGCTGGCCCAGGGCGCCCAGCCCAACGTCCAGGACAAAAGGGGGCGCACCCCGGTCATGTTAGCAGCTGAGATGGGGCACGACGGCATGGTGGCCCTGCTAGCTAAGAACTACGCTAAAATGAACCTGTTGGATGCTGAGGGGAAAGGTGTGCTCTTCTACTGCATCTTCCCCACCAAGCGCCACATGCGCTGCCTGCAGGTGGCCCTACACAGCATGGCTGATGTCAACAACGTCTCGCTCGCCGGGACACCCGTGTTCCTGCTGGCGTGTCAACGTGCCGCCGACTGCTCCGCCATGTGCCTCAGCATCCTGGAGCAGGGCGCCGACCCCAACTCAGCCAATCAGATGACAGGCCGCACTGCGTTGATGGAGGCAGCCAGGGCTGGGGCTGTGGAGCTGGTCAGAGCCATCCTACTGAGGGGGGCAAACCCCAACACCCTCGACAAGAACCACCTCCACGCCACACACTTCGCTGCCATGGGGGGATTCTTTGAGGTGATCCAGGTGCTGTCTGCTTACTCAGCTGACATGGGGGTGATGACATCAGAGGGGGACACTCCTCTGCACTACGCTGCCCGAGGGGGCTTCACTGATTGCTGCAGGTTCCTAGCACAGAGAGGTTGTAACCCCAAACAAAAAAACCAGGAGGGCCTTCTTCCCCGTCATATTGCCAAAGACAACAGCTACAAGGCAGTGGTAAAGGAACTCAAGAAAGCAGAGAGGATACACGGGAAGTACTCCAAAACCGGGGTGTCCAATCCCAACACTCCCTGGGCCCTGACCCTCCACGATTGGTCCCACGAGCACGAGGCCGCCCTCCGGAATGCCTTTTTGGACGAATCAGAAGCCAAGGGCACGGAGACAGTCTCTAGGGAAATGTTCATATCTGTGCTGCAGAAGCTCCAGGCCCCAGTGGAACTGGACCAGCTCCATAAGGTGGTAATGGCCCACGACAAAAGGAGAGAAGGACTAGTCAACGTCAGTGACTTCTTCAAGGGCCTCAAGTACCTCCAGAAATCATTTACCATCTCCTCTTATGGTCCAAAGAagaaaggaggaaagagaggtAAAAAGGGCAAGAAAAAAGCTAAATTCACTCTCCCCATGCCTATTTGTACCATCCCACCTGAGCTTATATACAGACGGGACGACGGCGGGCCGCCTCACTACATGATCGAGACGTACCAGCATTGTACTGACGTCACTCGTTTCGACCGCGACCACCCGCCAGTCCACCCGATAGAGGATGATTCCGCCTGGTACCTAGACAAGCCGGAGAGGGTCTATATCGACATCAACTACTGTGTGAAGACGGGGGACCTGGAGTCTCTGAACCTGGCCTTCAGTCAGGGGGTCCCGGTGGACGTGAAGGACCGCTTCTATAAGACCCCTCTCATGACCGCCTGCTCCAGTGGAAACTACGAGGTGGCCCAATTCCTCCTCAACTTGGGGGCTGACGTGAATGTGTGTGACCAGTTCCGTTGGACGCCCCTCCACCACGCTTGTCACGCAGGACAACTGGACATAATGGAGCTGCTGGTGGAGAGAGGTGCCAAGGTGGACACACCCGCTCTCAACGGTGCCACACCCCTCATGAGGGCCATCGAGAGCTGCAGGCCCTGCTGTGTGGACTACCTCATCAAGGCCGGGGCAAAGGTCGCTGCAGAAAACAAGAAAGAGCAAAATTGCTTGGACATCGCCCGTGCCTATGCAGACTTCAGGATTGTGGACTTGGTCCAGGCTAAGATTGATTCTCTGCCCAAACTCAAGGAGAACAAGAAAGGAAAAGGGGGTAAACCTCAACCTAAACCCAGACCTGCCACTGCCCAAGAAAAGggtcaTGGTCCGGTGACCCCTGCCCCATCTGAGATGGTAGTGAATAAAGCGATGTCCCTGAAGGAGAGCATCATTCTGCACAGCACTCAGATCATCAGCGGACAAGTCAACAAAGTGGACATCAGCTATGTGCCAAAAACGGTATGGGGCAAGCAGACCACCACCAGCCAGCTGGTAGAGAAGATgcagaagaagagggagaggtttTCCTATGAGGTGGACTTTGAGGACTTTATGATGCCCTTCAGTAAGAACATCCAGCAGAAATCTCTGAAGCTGACTCAAGCTACTAACTAGTGGGAACAAGACATGGTTGTAATCAGTCAGCAGTTATGTTTGCAGATGGAATATATTTGCCTCACATAGTTGGGTTGAAATCAGTTTTCAATTCAGGAAGGGAATTGGAATTCATTTAGTCATATTTTCAATTTATGTATTGAATTTCAATTTACTCTCTGAATTGAAAACGTAATTTGCCTTAGCACACTGATAGCTGAGAGGATTGTTTCCTCACTGTCATAGAAAGCCAGTAAATGTATTGACTAAAACAAGAGACACCAAGTAGTAGATGTAAAGATGTAAGAATAATGTATAGATGTTGTTCACTGTATCTATTGATATAAATCCACTTGAATTTAGTACAAAATTGTCTTCTTCTGACATGCCTACTGAGTACTCATTGTATCACTAGACACAAAGCACATGGCAAAGAGTCTGTCCTGTATACCAGACAGCTTCCACTCATCCAGACATCTTTACAGTCCTACGGATTTGATATAGAAGTCCTAGTAATGATTTGAAATATGTTGGGGAGGATCCACACCTCCCcaactgttggttagagcctgtaagtaagcaggTCTTCAcacaactgttgtattcggcgtaggtgacaaataaactttgatttgatttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU795970 lncRNA downstream 773 34015919 ~ 34016237 (-) True G699515
TU795945 lncRNA downstream 6847 34009945 ~ 34010163 (-) True G699490
TU795940 lncRNA downstream 47766 33968663 ~ 33969244 (-) True G699487
TU795939 lncRNA downstream 49583 33967135 ~ 33967427 (-) True G699486
TU795933 lncRNA downstream 57777 33959013 ~ 33959233 (-) True G699480
TU795993 lncRNA upstream 4090 34033221 ~ 34033456 (-) True G699537
TU796044 lncRNA upstream 80662 34109793 ~ 34110288 (-) True G699582
TU796054 lncRNA upstream 88531 34117662 ~ 34117891 (-) True G699592
TU796211 lncRNA upstream 141925 34171056 ~ 34177610 (-) False G699730
TU796213 lncRNA upstream 141925 34171056 ~ 34177610 (-) True G699730
XM_036985371.1 mRNA downstream 7633 33975488 ~ 34009377 (-) True LOC110529840
XM_036985370.1 mRNA downstream 7639 33975488 ~ 34009371 (-) False LOC110529840
XM_021612425.2 mRNA downstream 175408 33831672 ~ 33841602 (-) True LOC110529836
XM_036985356.1 mRNA downstream 194772 33719374 ~ 33822238 (-) False cdc42bpab
XM_021612441.2 mRNA upstream 107427 34136558 ~ 34157637 (-) True LOC110529846
XR_005052864.1 mRNA upstream 226384 34255515 ~ 34257262 (-) True LOC110529843
XM_021612449.2 mRNA upstream 516025 34545156 ~ 34550128 (-) True LOC110529848
XR_005052865.1 mRNA upstream 768714 34797845 ~ 34799304 (-) True LOC118965512
XM_021612451.2 mRNA upstream 1273423 35302554 ~ 35304730 (-) True LOC110529850
TU795919 other downstream 64654 33943022 ~ 33952356 (-) True G699468
TU794745 other downstream 1026949 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 1517600 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 1799461 32214486 ~ 32217549 (-) False LOC110529804
TU798118 other upstream 1553867 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 1612224 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 1612224 35641355 ~ 35687465 (-) False LOC110529865
TU798046 other upstream 1612224 35641355 ~ 35705313 (-) True LOC110529865
TU798297 other upstream 1871492 35900623 ~ 35904272 (-) False G701618

Expression Profile