RNA id: XM_021612449.2


Basic Information

Item Value
RNA id XM_021612449.2
length 2375
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110529848
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 34545156 ~ 34550128 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCATGTCGTTACATTGTTTATCATCTTACAGTTCAATGGTTCAGTTCCACCCGATGCTGTCAATTCAATGCAACATTGTAGCACAGCCAATAATATCATTTTTATGTCTCGTGAGCCCCACCTCCGGAGTAATGCATTGTGGGAGCCAGAGGTAGGCAGTGGTTTGGTATTTTGTGccagcgttagctagctagccggtTAATGTGGTAATTTTGATCAGAAATtgggagcaggaggagagaagtGATGGAGGAGAATGAATATCTCATGTCATCGCACTGTTAATTCCGTCTGAGAACGCTGCATAATACGACTACCATTTTAGTGGGTTCCATGCACACCCTTACCCTGCAGCCTCTTAGCGACCAACATGCCTTATGGAACTCTCCCCTGGCATCACTGATATTTGACAAAAACCCATGTTTAAATTCCAAAAGTTAGCTCTAGCAACCAGCAACAGGCGTTAGCAACGAACACAATTTGAAGACGTTGTTTTCcaagcctgcctgcctccctgcctggccGCCAAACACAGCAGTACCATTTGAAATTGCAAACCTGTGTTTCTCAACAATCGTCTCCTCGCCCTGCCCAAGGGGTGACAGCCTATCATGAGATTCCGAATCTACAAGAGGAAGGTGGTGATACTGacgctggtggtggtggtgtgtggctTAGCCTTCTGGACCAGTGGGAAGCAGAAGAAGAGCAGTGGAGTGGTGGTCCCCAAAGAGGCTGATGGGGCGAGGAGAAGCAGCAGTAGTCAGGTGCATCCACAGCCACAGGCCACACCTGCAGTCAGTCGGATACCCATCGTACCACCAATCGCACCTGTAGCACCTGCCAACGATACGCAGCTGGAGAATCACTCTGAAAAACAACTGGAGAAGGAGAAAACGGTCAAACCGGATGTGGACAACACTACCCTCGTCTACCGTGCCATCGTGTTCCAGCTCAACTTTGACCAAACGGTGAGGCACGAGGAGAGGTTCAGAGCAGTGAGGAAGAAGGATgatctggtggtggtggtacaggtACACAACAGACCTGACTACCTGAGGCTGCTGGTGGAGAGTCTGAGGAAGGCCCGGGGCGTGGAGAGCATCCTGCTCATCTTCAGCCATGACTTCTGGTCCCCCGAGCTCAACCAAGTGGTGGCCTCGGTTGACTTCTGCCAGGTCCTCCAGATCTTCTTCCCCTTCAGCATCCAGCTGTACCCCCAGGAGTTCCCGGGCCACGACCCCAGGGACTGTCCCAGAGACATTCCCAGAATGGACGCCTTAAAGCTGGGTTGCATCAACGCAGAGTACCCTGACTCATTCGGCCACTACCGCGAGGCCAAGTTCTCCCAGACCAAGCACCACTGGTGGTGGAAGCTGCACTTTGTGTGGGACAGGGTCCGGGCGCTGAAGGACCACCGGGGCTTGGTGCTACTTATAGAGGAGGACCACTTCCTCTCCCCGgacttcctccacctcctcaagCTGATGTCGATCCTGAAGAGGGAGAATTGCCCAGACTGTGACATCCTGTCTCTGGGGAGCTATGGCCACATCAGCTACGCTAGCAAATCCAACAAGGTGGAGGTGAAAGCCTGGAAGTCCACCGAGCACAACATGGGCATGGCTCTGAGCAGGGAGACCTACCAGAAGCTCCTCCAATGCACTGATTCCTTCTGCACCTACGACGACTACAACTGGGATTGGTCCTTGCAGCACCTGACCGTGACCTGTTTGCCCTCCTACTGGAAGGTCATGGTGAGCGAGGCACCCCGTGTCTTCCACGCCGGGGACTGCGGAATGCACCACAAGAAGTCTGTGTGCATGCCGTCCAGCCAAAAGTCCAAGATAGAGAACATTCTTCAGAGTAGCAGCAATCAGCTGTTCCCCAAGAACTTGCTGATCACTAAGAGACTGCCAGCTAACGGGGCAGGGGGGGTGGCGCCCCATGTGAAGAACGGGGGCTGGGGGGACATTAGGGACCATGAACTCTGCAAGAGCTACCTTCGATTACAGTGAccttattatcattattatattgTTACTCTTCTCTTTTTTTGCATCCTGACTTTAAGAAAAAGAAAGCCTTTTAAAAAGTATCTTTATGGACTATTTCTTCATATTGCCTGTTTTATCGGACTGTTCCAAATAAAAAAGTATGTTGGGTTTGGAATTCTCTCTATCCAAGGCATTGATTTAGAGTATACAGTATACCCTCTGAAATGTTCTACAGTATGTAATCTGATAAAATGACTGTGGTGCCTTTTTTCCCATACATAATTGTTCAAGTGTTTCATTATTTGCATTCATAATAGCTTTTAATAGCAAGAAtgccattgttttttttttagctaaaATTAAACTGGATATGTGGA

Function

GO:

id name namespace
GO:0009312 oligosaccharide biosynthetic process biological_process
GO:0005795 Golgi stack cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00736 MGAT2; alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU796428 lncRNA downstream 14388 34525613 ~ 34530768 (-) False G699903
TU796432 lncRNA downstream 14388 34529259 ~ 34530768 (-) True G699903
TU796435 lncRNA downstream 15614 34525613 ~ 34529542 (-) False G699903
TU796431 lncRNA downstream 16840 34525613 ~ 34528316 (-) False G699903
TU796422 lncRNA downstream 19639 34439399 ~ 34525517 (-) False G699898
TU796514 lncRNA upstream 3689 34553817 ~ 34556091 (-) False G699979
TU796515 lncRNA upstream 3689 34553817 ~ 34554676 (-) True G699979
TU796576 lncRNA upstream 92650 34642778 ~ 34643077 (-) True G700038
TU796602 lncRNA upstream 109184 34659312 ~ 34659599 (-) True G700064
TU796604 lncRNA upstream 109878 34660006 ~ 34660550 (-) True G700066
XR_005052864.1 mRNA downstream 287894 34255515 ~ 34257262 (-) True LOC110529843
XM_021612441.2 mRNA downstream 387519 34136558 ~ 34157637 (-) True LOC110529846
XM_036985372.1 mRNA downstream 516025 34017010 ~ 34029131 (-) False ankef1a
XM_036985371.1 mRNA downstream 535779 33975488 ~ 34009377 (-) True LOC110529840
XM_036985370.1 mRNA downstream 535785 33975488 ~ 34009371 (-) False LOC110529840
XR_005052865.1 mRNA upstream 247717 34797845 ~ 34799304 (-) True LOC118965512
XM_021612451.2 mRNA upstream 752426 35302554 ~ 35304730 (-) True LOC110529850
XM_021612453.2 mRNA upstream 756800 35306928 ~ 35321805 (-) True LOC110529851
XM_021612459.2 mRNA upstream 876188 35426316 ~ 35429137 (-) True LOC110529854
XM_021612460.2 mRNA upstream 912145 35462273 ~ 35473851 (-) False LOC110529855
TU795985 other downstream 521271 34023291 ~ 34023885 (-) True ankef1a
TU795919 other downstream 592800 33943022 ~ 33952356 (-) True G699468
TU794745 other downstream 1555095 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 2045746 32498799 ~ 32499410 (-) True G697774
TU793920 other downstream 2327607 32214486 ~ 32217549 (-) True LOC110529804
TU798118 other upstream 1032870 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 1091227 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 1091227 35641355 ~ 35687465 (-) False LOC110529865
TU798046 other upstream 1091227 35641355 ~ 35705313 (-) True LOC110529865
TU798297 other upstream 1350495 35900623 ~ 35904272 (-) False G701618

Expression Profile