RNA id: XM_036985400.1


Basic Information

Item Value
RNA id XM_036985400.1
length 2127
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110529868
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35916240 ~ 35920906 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCTAGAGCTGTCTAGCTGTCACCTCAACAACACAGCAACAACCTGGTTCTACAGTGTTACATCTGAGGAGACCAGTGAATAACAGATACTATGGAAGGAAGCAACAGCATCTGGCCCAGCCAGAACCAAACAGGGGGTCCTGCCTGGCCGGCACAGCCCACCCAGCCCCCATCTTGCTGGCCTGGGCAACCCAACACCCCCTGCTGGCCTGGGCCACAACCATCCCAACCAGCCCCAGCTTCAGCCCAAAACTGGCCTGGTCCCCAACCACAACCACCCCAACCAGCCCCATCCCATCCCTGCCAGCCATGCTGGCCTGGACCCCAGCCTCCCCAATTCCAGCCCCAGCCTCCCCAACCCCAGCCGCAGCCCCAACCTCAGCCTGCACCCCAGCCTTTTCAACCTACAGCTTCAGCCCCGGCTTCTTCCCAAGTCCCCAGCCAGCCTAGTGCCCCAAGGTGGCCGGTTACCCAAGGCCTTATCCCAGGCGTTAACCCAGGGTCTGGATGGCCTTTCAGCCCTGGTCAGTCTGGTTGGCCTGGTCAGAATCCAGGTGGCTTTACACCTGCTCCACAGTGGACTCCAACGCCAGCTGGACGTCTGAGCGTGCCCTACAACCTGAACCTACAAAGAGGCATCTACGACAAGATGATGATCACCATCATGGGCCGGGTCAAACCAAATGCTAAGCAGTTCACAGTGAACTTTGTGCGTGGTAATGACATTGCCTTCCACCTCAACCCTCGGTTCAACGACGGGGGCAAGCAGGCAGTGGTGAGGAACACCATGGTGGGAGAGcgctgggggaaggaggagaggcacACACAGGGAGGCTTCCCCTTCATGGCTGGACAGTCCTTCGAGATGAAGATTCTGGTTACGTTTGAGGAGTTCAAGGTGGCTGTGAACGGAGCTCAGCTGTTCGAGTTCAAACACCGCGTCAGAGAACTCAACCAGATCGATCGCATCAACATCCTCCATGATGTCATCCTCACCTACGTCAACGTAGACACAATACCATGACACCCACACCCATGACATCACTATACAGCATATAACACCCAGCATGTGCTAAATACATACAATTAATTATTTGCACCtgtttcatgatgatgatgatgatgagctgTGCTCATTCTGTGGTGCACACACAGTACTGCGTTAATGCCCACTAACTCTGTCCATGTGCAAATATACGTGATCTTAggacaaaaaaaaatgcaatgTTCTTTACTGTGACACGTTGCTTTCATCAAGAGAAAAGTCAACTGTTTCCAGCAATCAGCAAATATAAGCGCACAAAATTGTAAGCGTCTCTATCCGTTCCAAATCATGCATATTATAAGGAAAAAGCTAAGCAATGGGGACCGTCTATTTTGAAATGCTTTTTTAAACTCATCATCTCCAACATTGTGAGCATCCATTACAGAGCTTTGCTTTGGTGTAGTTTGAGGCCTGTCCATTCACATCAGTTGTGTTCTTCTACTGAATTTCCTTTTCCTGATGTCTGTTGGGGATTCTTTTTCTGCTTGCCAATGCAAAGTCTACAAACCTACCGTGTAAGAGCAGACCGACCTACATATTGAATAGGCCTACATGGGAAGAATCCTGCACAACGTGCACATTTCGCAATTCATTTTTGATCATGAACAAGTATTTGATTCGTTGTGTATGAAAATGATTGGTGACATATGCATAAAAGGTGAGTAATTTACCATCATTTGTCAACCTTTTGATAGTTGATTTTCCAATTTTGATAGTTTAGTGACCGCAAAGACGGTAATGAAATGATTAAGTGGGATATTTTTCAAGGCATACCTCTAGTCAGCTTGACTCTAGAGATATGCATGTATAGTGTTTTTGACTCTTTATGCAGGCAGTTATGTTCTTTTGATTTATTTGATGTTTTGAGAAGGCAACTACATTTTCAAAATGCATTTACTGTTTTGAAAAAGGCCACAGAGTTCTGAGACTTGTGTACACTGAATATTTTCCCGATAAAATACCGCTGGCAataaagtggggcaaaaaagtatttagtctgccattgtagggtttttaatgaatttatttgcaaattatggtggaaaataagtatttggtcacctacaaaacaagcaagaat

Function

GO: NA

KEGG:

id description
K06831 LGALS3; galectin-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU798230 lncRNA downstream 116661 35798798 ~ 35799579 (-) True G701552
TU798216 lncRNA downstream 147027 35768175 ~ 35769213 (-) True G701538
TU798215 lncRNA downstream 149802 35766223 ~ 35766438 (-) True G701537
TU798214 lncRNA downstream 150219 35765802 ~ 35766021 (-) True G701536
TU798211 lncRNA downstream 154302 35761708 ~ 35761938 (-) True G701533
TU798678 lncRNA upstream 11428 35932334 ~ 35956729 (-) True G701966
TU798725 lncRNA upstream 83337 36004243 ~ 36006929 (-) True G702011
TU798728 lncRNA upstream 88586 36009492 ~ 36009856 (-) True G702014
TU798731 lncRNA upstream 94969 36015875 ~ 36016190 (-) True G702017
TU798734 lncRNA upstream 98987 36019893 ~ 36020104 (-) True G702020
XM_036985396.1 mRNA downstream 9539 35901652 ~ 35906701 (-) True LOC118936680
XM_036985397.1 mRNA downstream 9541 35901652 ~ 35906699 (-) False LOC118936680
XM_036985395.1 mRNA downstream 9543 35901651 ~ 35906697 (-) False LOC118936680
XM_021612493.2 mRNA downstream 155671 35708834 ~ 35760569 (-) False LOC110529866
XM_036985404.1 mRNA upstream 132030 36052936 ~ 36058362 (-) False LOC110529870
XM_036985403.1 mRNA upstream 132030 36052936 ~ 36059371 (-) True LOC110529870
XM_036985411.1 mRNA upstream 142631 36063537 ~ 36129888 (-) False LOC110529235
XM_036985405.1 mRNA upstream 142631 36063537 ~ 36206480 (-) False LOC110529235
XM_036985406.1 mRNA upstream 142631 36063537 ~ 36206480 (-) False LOC110529235
TU798297 other downstream 11968 35900623 ~ 35904272 (-) False G701618
TU798046 other downstream 210927 35641355 ~ 35705313 (-) True LOC110529865
TU798044 other downstream 228604 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other downstream 228775 35641355 ~ 35687465 (-) False LOC110529865
TU798118 other downstream 326363 35582998 ~ 35589877 (-) True G701454
TU800348 other upstream 1434190 37355096 ~ 37361593 (-) True LOC110529880
TU800488 other upstream 1568321 37489227 ~ 37492157 (-) True LOC110530908
TU801610 other upstream 2116819 38037725 ~ 38038346 (-) True G704702
TU801790 other upstream 2392583 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 3298738 39219644 ~ 39226313 (-) True G706683

Expression Profile