RNA id: XM_036985404.1


Basic Information

Item Value
RNA id XM_036985404.1
length 2091
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110529870
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 36052936 ~ 36059371 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACGTCAGTGCAGTGAAAAGCTCATTGTGAGAAGAATACTCAAATGCAAGTCATTATTATAACATGTATTAGACTCACCGGTGTGGACATCTCTATGCCCTGCCCATTTTTCTAGCATAGACATGCGGGATCCTGGCCCGGTTGACCGTGATGGctgagcaagagggagagaatcTCTCCGGTCTGTCCACCAACCCAGACAAAGACATCTTCGTGGTCCGGGAGAACGGGACCACCTGCCTCATGGTCGAGTTCGCTGTCCGCTTCACGGTCCCCTTCGACGTCCTCGCGATCAACGGGATAGACCTCATCACGGAGAATGCGTATCTGTCTCTGCCTCGCGGGGCAGACATTGAAGGGAAATGCGGGAGCCAGGACGCCGATATACACATCTCGTGGAAGGATAAGGCCTACACACTCCGCATCAACTTCGTCAAGGAAACCCGTGACAAGGGAGATGAGGTGTGGAAGATTAGCAAATTGCAGTTTGTTTATGACACCTCGGAGAAAACGCATTTCATCAACCCATACAACCctGGGAAGCACACAGCCAGCTCCCACGGTCTGTCAGCGCTAGTGACCCCTGCTGGCCACTCCTATGTCTGCGAGGCTAAGCAGACACTCACCCTCATCTCCAGTGACCACCAAAAGGGAGTGACTGTCGCCATGAGTGACATTCAGATCCAGCCCTTCGACATCAACTCAGACTTCATGTTTAGTGAAGCCTATAAGTGCATCACGGACCAGCGGGAACAGCTGGAGGAGACTCTTCCTCTGATCCTGGGTTTCATCCTGGGCCTCATCATCGTCATCACGCTGTCCGTCTACCACTTCCACCTCAAACTGACCGCTGTCACCCAGCCACAACTGCCCCGCGACCGGTCCATGTACAAGAACATGTAAGGAACTGGACATTGAAACAAACACTATATGACGACTCTCCATGGTCAAGGATAGTACAGTAGAACAACATTCCAAGACTCCCCATGTTCAAGACCATCTAAGGAATCAAACATTAGATCATCATCAACACAATGACTCTCCATGTACAAGGTAATAGGACACTGAAACAAGCACAACATGATGTTCAAGACATGTAAGGAATCAGACACTACAAATCACTACGACTCTCCATGTTCAAGGATATAGGACATTAAAAACAAGACGACATGACTACTCTCCATTCAAGGATATAAAAAAAATGGTACTAGACTACAATTATAACCACAACGCTCCTGCCTCTCCAAAGTCAAACCAATGTGACTTCCCTTGCTCTGAACTCCCCATATATTGGAGAGTAGGCCATCACTTTATGGAGGCCTAACTTGAGATACGTGTGCGTAATTTGGAGCGTTCTCGTAAAATCCTGCATTGAAGTCCTTTGGAGACTTGCGCAACATTCGATTTACGCacacgttttttttcttcttcagttaGCGTTccaccccagtgtgttctgctgtCCAGAAATcgctgttttttctttttttgttgagagGCCTGCGCTTTTGTCATCATCCCCCCCATCACGTGTCTCTGTCTTTTCTGTCAACGAGCTACAAAAGAAACCTGGCAGGTTAGCAGGTCCAGAGTTGATGTTCAGCTGAAGTTTTTACTTTCCTGACTCCGGTTTTTACTTTTTGTTTTAGAATGCAACCATCGTGGTGAAAGTGGACGgtgttgtggtgtgtatgtaCACTGTGCAGGTGTTTCAATGAACTTCAGAAATCATGCAAAATAAAACATTGCAGGAAACGCTTTACTTTGGTATGAACGGATCATTTTCCAGATCTGACTCGATGGAATTATGTcaagaaaaaaatatgaaacgtaaattgaaaaaaaaagaaggaaaacaTGGTCTGTAAAAacgtgccccccccccaaaaaaaaatatttaatacatttatcTCATATCAGAATGTCAGAAGAAGTTTATCATTGTGTTTATCATTGTGAAAGAAATGTGCAAAGATATTTCAGATTTAAAAAGAATAAATGTACACTATTTTCAGAAAGACTATGCATAGAAAACTATGCTGATGCTACTTTAATGTTCACCGAAATAAATTTTACAGGAGATATCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU798753 lncRNA downstream 1115 36051514 ~ 36051821 (-) True G702039
TU798740 lncRNA downstream 25480 36027256 ~ 36027456 (-) True G702026
TU798734 lncRNA downstream 32832 36019893 ~ 36020104 (-) True G702020
TU798731 lncRNA downstream 36746 36015875 ~ 36016190 (-) True G702017
TU798728 lncRNA downstream 43080 36009492 ~ 36009856 (-) True G702014
TU798775 lncRNA upstream 42987 36101349 ~ 36102190 (-) True G702056
TU798872 lncRNA upstream 166070 36224432 ~ 36224789 (-) True G702145
TU798889 lncRNA upstream 170813 36229175 ~ 36233884 (-) True G702149
TU798901 lncRNA upstream 201006 36259368 ~ 36259824 (-) True G702161
TU799036 lncRNA upstream 425346 36483708 ~ 36485467 (-) True G702295
XM_036985399.1 mRNA downstream 132030 35916240 ~ 35920906 (-) False LOC110529868
XM_036985400.1 mRNA downstream 132030 35916240 ~ 35920906 (-) True LOC110529868
XM_036985398.1 mRNA downstream 133717 35916240 ~ 35919219 (-) False LOC110529868
XM_036985396.1 mRNA downstream 146235 35901652 ~ 35906701 (-) True LOC118936680
XM_036985397.1 mRNA downstream 146237 35901652 ~ 35906699 (-) False LOC118936680
XM_036985411.1 mRNA upstream 5175 36063537 ~ 36129888 (-) False LOC110529235
XM_036985405.1 mRNA upstream 5175 36063537 ~ 36206480 (-) False LOC110529235
XM_036985406.1 mRNA upstream 5175 36063537 ~ 36206480 (-) False LOC110529235
XM_036985407.1 mRNA upstream 5175 36063537 ~ 36206480 (-) False LOC110529235
XM_036985408.1 mRNA upstream 5175 36063537 ~ 36206480 (-) False LOC110529235
TU798300 other downstream 134761 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 148664 35900623 ~ 35904272 (-) False G701618
TU798046 other downstream 347623 35641355 ~ 35705313 (-) True LOC110529865
TU798044 other downstream 365300 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other downstream 365471 35641355 ~ 35687465 (-) False LOC110529865
TU800348 other upstream 1296734 37355096 ~ 37361593 (-) True LOC110529880
TU800488 other upstream 1430865 37489227 ~ 37492157 (-) True LOC110530908
TU801610 other upstream 1979363 38037725 ~ 38038346 (-) True G704702
TU801790 other upstream 2255127 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 3161282 39219644 ~ 39226313 (-) True G706683

Expression Profile