RNA id: XM_021612601.2


Basic Information

Item Value
RNA id XM_021612601.2
length 7121
RNA type mRNA
GC content 0.46
exon number 24
gene id efr3a
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 44184993 ~ 44436559 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTATATTTCCCCCATTAAACagagaaatatgtaatacattaTATTGTTTAGGAGCGAAGAGGTGACATATCGCTTCAAGAGCGACTCCTACTTCCGTGTTGTCCCTCAATGTAAAGCAGTCCTATTACAGGAAGCTGTAGCCTAATCTGTGGGGGTTAATCCGCGTAGTTTACAGTGAAGGAGCAGCGATTTCGGAGAATACGGacgatataaactacatgtagcAAAACAGAAGATTCAATCGCTGCCCACGTCAGAGGAACTGCGGTACATTAGCGGAAGAATGCCAGCGGGAGTTTGTGGCTGCTGTGGACCCCTGAGGCCCAGGTACAAACGCCTGGTTGATAACATCTTCCCAGAGGACCCCAAAGATGGCCTGTCCAAGTCAGACATGGAGAAGCTCACCTTCTACGCGGTTTCAGCCCCGGAGAAGTTGGACAGGATTGGGGCCTACCTGGCGGAGCGACTGAGCCGAGATGTGGTCCGCCACCGCTACGGGTACGTAGTCATCGCCATGGAGGCTCTGGACCAGCTCCTGATGGCCTGTCACTCCCAGAGCATCAAGCCCTTTGTGGAGAGCTTCCTCCACATGGTGGCCAAGCTGCTGGAGTCCCGGGAGCCAGACCTGCAGGTCCTGGGGACCAACTCGTTTGTCAAGTTTGCCAACATCGAGGAGGACACACCGTCCTACCACCGGCGCTATGACTTCTTTGTCTCCCAGTTCAGCGCCATGTGCCACTCAACCCATGAAGATCCTGAGACCAGAACCAGGATCCGTGTGGCCGGTATCAAAGGGCTGCAGGGTGTGGTGAGGAAGACGGTGAACGATGAGCTTCAGGCCATCATCTGGGAGCCCCAGCACATGGACAAACTCATCCCCTCCATGCTGTTCAACATGCAGGATGCTGAGGACCTAGACAGggTGGGCCCACCCGGCACGCCTTCGGAGACAGGGCAGGATGGTGAGGAAAACCCAGCGTCTCTGGCCGAGAGCTGCTTCAGAGAGCTGCTGGGAAGAGCTGCCTACGGCAACATGAACAACGCCGTCCGCCCTGTACTAGTTCATCTGGACAACCACCGGCTGTGGGAGCCCAACGAGTTTGCTGTTTCCTGTTTCCGGATCATCATGTACTCCATACAGGCCCAACACTCTCACCACGTCATCCAGCAGGTCCTGGGCCACCTGGACACACACAACAAGAACACCCCTCGCATGAGGGCCGGCATCGTGCAGGTCCTTCTCGAGACGGTCGCCATAGCAGCCAAAGGCTCCGTCGGCCCTACAGTACTGGAGGTGTTCAACACACTGCTCAAGCACCTGCGGATGAGTGTGGACTTTGAGCTGGGTGAGAACTCCAGACGGAACTCTGGCGCCAGTGTGTCCTCGTCCGGACGGGTCAAGGAGAGCGAGGAGCGCATTGTCCAGAACGCCATCATCCAGACAATCGGGTTCTTTGGTGGCAACCTGCCAGACTACCAGCGCGCGGAGGTGATGATGTTCATCATGGGCAAGGTGCCCGTGTATGGCACCCCCTGCCACACCCTGGACACTGTGAAGATTGGGCACCAGGGCACCAAGCGTATCCAGGCCATGCTGCTGAGCTCGCTCATCATGGTGACCTCTGGTTTCAAGTCCAAGACCATGGTGGCAGCGCTGCCCGCACCCTTCCTGGACCCACTTTTCTCCATTTCACTCATGGAGGACTGCGAGCTTCGCCAGTTGGTCCTTGAGATCCTGCTCAACATCATCGATCGCCACGACAACCGTGCCAAGCTGCGGGGCATCAGGATCATTCCTAATGTGGCGGCCTTGAAGATAAAGAGGGAGAAGATATCAAAACAAGACGTTGGGTTCATGAAAAAGcATGGGCAGCAGTTGTACCGTCACATCTACCTGGGCTGTAAGGAGGAGGACAACGGTCACAAGAACTTTGAGCTGCTCTTCACTACCCTGGCCGTGCTCACCATTGAGCTGGCCaatgaggaggtggtggtggaccTCATCAGGCTGGCTCTTGCCCTGCAGGATATGTCCTTGGCTAATGAGGAGAACATGCCCATGGTCATCCGCTGTGGCATCATGGCACTGGTGGCGGCCTACCTGAACTTTCTTAGTCAGATGATCGCCAACCCAGCCTTCTGTCAACACGTCAGCAAGGTGATTGAGATGAGGAACCTGGAggccccttacctcctccctgagCACATCTTCAGAGAGAAGTGTCCGCTTCCAAATTGTCTTGAGAAGGAAGACCGGAGCCTATATTTCCAGACGGTTGACCTGGCGGAGTGCCTGGTCGCGCCAGGATACAACGCTGAGCGTCTTTCAATCCCCTACGTCCCTCAAGTGACGGATGAAGACCGCCTCACCAGAAGAAAGAGTTTGGTTGACACCATTTCTCTTCAAGTGGATTTCCCTTCCGATAGCCTACCAGATAAGTCTCTGCTGGCTGAGGAGATCACCTTCGAGACTCTGAAAAAGGCCATTGACACCACAGGGttggaggagcaggagaaggagaagagacgCCAGGTCATGGAGAAGTTCCAGAAGGCTCCATTTGAGGAGATTGCCGCCCACTGCGAGTCCAAGGCCAATATGTTACATGACAGACTGGCACAAATCTTCGAGCTCACTATCCGGCCCCCTCCCAGCCCCTCTGGGGTGGTGTCTATCTCTGCAGGCCACGCTCAACACCAGTCTGTCCCTGTCTACGAGATGAAGTTCCCCGACCTGTGTGTCTACTAGATCAAAGACCAGCCACTAACGCCTTGTatcctcaaccctaaccctaaccctaacccaaccactAACCATACCCAGACCTGTGTGTCTACTGGAGCAAAGACAACCACATAGCCATTACCCTAACCACTAACACATtgtagcctcaaccctaacccatttCCTAACCCCTTCAGATCTGCATGTCTCTTAAAGCAAAAACAGTGGCAGTTTAGAACCACTAAAACCCTATACCCTCAACCCTACCGCCTAAGTCTGCTCCTTAGCCCTATACAAGGTATGTCAGCTACAGCAGAGACTAACTGTGGTACTGTACCACTAAGCCCGAATACTGTGTTCCCTATTTCTTAACACTGCACATTGTTCCTGCCCCTCCTCAGACTAATGTGTCTATTACCAGATGAGATGGCTGTATGACTGTAGTTTCCAGTCACACGCACACAGTCTACGCACACGTGAACGTGCGCGCACACGCACATTCGTATTTATAGTCTAATCAATTAGCTGTGGTGTGTTGGCTTATACACTTGGAAAGTGGAGATGTCATAGAACATCGAAAAGTGAATATTACTGGAGGCACATTGTCGTTTCAAAGATACCATCGCGCTTGCTAGCGAAGAGATTTGTAGTGGCTAATTAACAGTAAATAAGTTAATTGTTTTGCCTCACAGTTAGCCAAGAGGCATACCTAACCAGCTAAAATTGTTTACAGCTAGTTAGCAATCGTTTCAAAACTATTTTGCTAGCAACATAGTGCTGCCGTGTTAATTATAACCGGTCTCACAAAATGTGTCTCCAGTTGTTTACCTTTTACCATTGTGCATATCCATGCAGTTCTGTGCATATTAGAGAAAAGTAATTTTAGCGGCCAGTCTGAAAAATTGCTTATTTTATTGGCTTTTTCAGACAGATAAGCCACAGTGCTGCAGAAAGctaatacttttttttaatgtCCCAATTTAATGAAAACCAATTCATATATGTTAATCTGTGTGGACAAGGTGAATTTCAGGTAGAACATTGAGAGTCTTGGAAATGTGGAAATTCTATTCTGGAATAGACATCTTGGTGGATTGAGTCTTTATTGCAGGTCCATTATGGCAGTGTTTCAAAAATGTTGGGTATGAGACCAGGCTAGTAACCCCCCTGTTATGTTATGGTCTTGGATTTTGGTTCCTTCGATAGGAATCCAGTCACCACTGTTCAAAACCTACTGGAGTCATGCCCTTCAGGACCTGTACTGAGGAATGGTATTGTGGACCAGCTAACGCTAATAGAAAAGCAATCAGTTGATTACTAAAGGCACCATGTTATTTAGTTGATATATTGATAGTTTAGGATGATATGGCAGCCAAGTGCATTCACCTGTTTTGGTATTAATTGAAGTGTTCGGGCAGCTGTACACTCCCTTCTCCTCACCATCTTTTTCATAGCACTTTCACAATATGGTACAAAAACATGTAGTTATTTTTATTACACCCTCTTGACAAGATTCATGTGAAGGCTATTAAGTCGTCTTTATCTTCTCAATCCGCTCACCGACGCTGAGCACAATACAAATATTCTAACGCAATGGACTTTGGATAGTTGCATCTATTTTCTTGTAAGGCATTTTACATGAACATTTAGAGATTTTTCATTATTGATTATCACATTTCAAATCTCTGTCATTTCTCTTTCCAGTAATTTGATGAACCTGCATTTTGACATGACGTATTGGTTTGATATCACAATGCATCAAATaaatatagatacagtatatacaatgtTATGCTTATTGCTATAGGCCAGATGTTTGTGTGCAGTATAATTGGTATTGTTCACATGGGTTTCATAGCTTGCAGCTTCCTGTGGATATGTGTCATGATGATTTGTCTTGAGTTAGTATTGATTGTTATTTAGAGTATGTGGGAAAATATAATTGAGAGGGTTCACCAATATCGTTTTCCAACTTACCTGGCAGGACAAGATCTGTCATAACTCTGTTGGCCATCTAGAATACCAAAACGCTTTCATCTTTACCAAAGAATCCATTTGCCACGGCCCCCATCCGTCCCCTCCCTCTAATGTCTTAATAACGATGTCACTCAACATTTTGTTTCTGAGGGAACCAAAtatctgtctgtgtgctgtttgGGGCTCGCCACTGGGCTGTTTAATAACCCAGGTTGTTATCTTACTATTGTTACATCCTGGCTTGGTGCGGGTGTCTCTCCTGTTTCTAGTGCTAGGTATGATGCAGACATGCTGTGTAAAACGCTGCATTAGTCAAGGAAAAAAGGTCCTCGATTTGCGGTTGTCGGATTATAACAGAATATTTTGGAAGGACCCATCTAAGCAAAGGACCATTCGGCGAAGGGGTGGGCATAGTTCAGTCCTACAGAGGTTAGTGTCAGGGATGGGACTACAGTCCTCCCAAACAAGACACTCTAATAATGATTATGAGGCCATTTGAAAAGAGGCTTCAGCGATATGGGTGATGTTGAGATGGTTAATAGCGTGGGCTCAAATTGAAGAATAGAGAGGCTAAAGTGAGGTTGTTATCAAAAGGTTCTCTGTGATGGCATCCTGTTGTACCTTCTGTAACAGGATACTGCAGAACGTTGCTGTGGGTGGTTTTGTATGTTCAAGGTGGTTTCATGTTAAGGGTTAAGTCTCGCTCAGCCAGGCTTTCAGTCTCAGGTAACCTGAGCCACTGAGAGACTTGAGTCCAGCTTGAGAGACTAGTGGATCAAAATTGGTTAGTATAGTGAGGAAAGACGGCGGGTGGTACGGTGTATGATTGTAAATGGGAATCACTAAGGTGATTAGTGGACACTAGCTTCATCCATTTTAATTGGCTGGTGGTGGAAATGACCTTTTggattatataaaatatatatatatatatatatatttcatggtAGCTAACGTGGTACTTTATGACTCAGACCTAAGCCACTTGTGAAACAgataaaataacacatttggcaCAGATGATTGGCCCTCAAACATAGATTTTTCCAATTGTTTTTCAATCGCGACCAGGTCGTTGAGATTGCTATTTCGGGAACCTCACCCAAGAGCAGCATAAGACAATAATGTTCATCCATATCCATTGTCGAATGGAAAATTTTTATTTTTGCCTGAGACCTTTTGCTCATTTTGACCTAATATGTAGAAATGCCCCTATTGATGCATATAATCTGAAGTCATATCAGAAATGTGTAATCTCATTCATGGCGAAGTGCAATATGTTCTCCTCTGTATGGTTATAGGATTGTTTTTCTTTTGCAACACGTGATGTCTTATCTTGAACTGTGGTGTCACTTCAGATAGCATATATTACTACGAGTTTATCGAGAGATTCTGGAATATCAAGTGTGTATGTATAACCTATGGGAGTTAAGACATGAGGAATGTAGACCATACAGCATCATTGACTGAGATcgagtgccagtctgttttttGCTATCATTCCAAATTCCCTGTCACTCATTGGCTTGACAATGACTGCAATGGAGTAGACAagagcacaaacaggtctgggactaGGCTACCATTTGCTTTCTTTATGCTGAATTTGTCAATAGTCTAATatggtatttttttttaaatcgataTTCATCATATGAGTGGCATGTTGCCTGATAGAAAATGGGTTGGGAGTTCTTCTGTTTATTGTTCAAAATCAGCACTCCTCTTAACTTGAAACGGTGCAATGGGAGACCACTGTTTTGGCTAAACCAGCCTTTTTGAAGTCTGATGTATTCTTGGTGTTTTGAGACGCCCCCATGTGTGCTGGTTTTCCTTCCAACATATCTACGAAATCTTTCCTGAAGGACAAAATCCTGACAAAAGTTGGGTTAATGCCAGATACAATTCAATATTCAATAAGCAGCTCGATTTAAGTCTTGTGTGGATAAGGAGATGAGTTTGCATGAAAACCAGCAACCACAGGGGGGTCTGAAGACCTGGTTTGACTAAAGGCTTCACTGTGGTGAAGAGGCTGCAGGGATATTGAGTCAATTTTCTCTAGTTATTACAATGACGAGATAGAGAATAGTGATTATAGACTGAAATGAACAGTATAACAATTAACAATCATTTGAGCGACTGGTCAGCAATGGCTACAATTAAGCATCATTCTTAAAGCCCCATGCTGTGTTTTTAATTTAACATCACTTTGTGTAATAAAtaagtgtttttttgttgttgttgtatataTATTGTTTATTTCTCTAAGACTCCTTGGGCCACTGAAATGCTCAGTCAGATTGTGTGGGCGTTAGGAAACAAAATGATTACaacctatgttgtgataattgcgttgtttgctctgtAACCCATTTGTTCATATGCCACATGATATACAATAAAGCCGACACAACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU808241 lncRNA downstream 89035 44094015 ~ 44095958 (-) True G710822
TU808239 lncRNA downstream 96304 44088363 ~ 44088689 (-) True G710820
TU808238 lncRNA downstream 97132 44087661 ~ 44087861 (-) True G710819
TU808236 lncRNA downstream 98583 44086173 ~ 44086410 (-) True G710817
TU808228 lncRNA downstream 109757 44074758 ~ 44075236 (-) True G710809
TU808437 lncRNA upstream 1346 44437905 ~ 44438369 (-) True G711007
TU808540 lncRNA upstream 85435 44521994 ~ 44522225 (-) True G711107
TU808555 lncRNA upstream 95406 44531965 ~ 44532192 (-) True G711121
TU808565 lncRNA upstream 101266 44537825 ~ 44538121 (-) True G711131
TU809677 lncRNA upstream 113710 44550269 ~ 44629270 (-) True G712181
XR_005053023.1 mRNA downstream 421675 43759329 ~ 43763318 (-) True LOC118965613
XM_021612591.2 mRNA downstream 582688 43599754 ~ 43602305 (-) False mycb
XM_021612593.2 mRNA downstream 582688 43599754 ~ 43602305 (-) True mycb
XM_021612583.2 mRNA downstream 1658407 42431791 ~ 42526586 (-) True puf60a
XM_021612585.2 mRNA downstream 1658466 42431791 ~ 42526527 (-) False puf60a
XR_002474328.2 mRNA upstream 544410 44980969 ~ 44984268 (-) True LOC110529115
XM_021612606.2 mRNA upstream 685524 45122083 ~ 45173741 (-) True basp1
XM_021612608.2 mRNA upstream 1048459 45485018 ~ 45495100 (-) False znf622
XM_021612609.2 mRNA upstream 1048459 45485018 ~ 45495101 (-) False znf622
XM_036985484.1 mRNA upstream 1048459 45485018 ~ 45495101 (-) True znf622
TU806781 other downstream 1013911 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 1464294 42719771 ~ 42720699 (-) True G709272
TU804129 other downstream 4225380 39956961 ~ 39959613 (-) True slc22a16
TU803684 other downstream 4958680 39219644 ~ 39226313 (-) True G706683
TU801790 other downstream 5871190 38313489 ~ 38313803 (-) True G704874
TU808567 other upstream 102234 44538793 ~ 44539504 (-) True G711133
TU810338 other upstream 1021218 45457777 ~ 45458248 (-) True G712814
TU811283 other upstream 1874571 46311130 ~ 46325681 (-) True crfb16
TU811888 other upstream 2614908 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 2741865 47178424 ~ 47178736 (-) True G714425

Expression Profile