RNA id: XM_021612661.2


Basic Information

Item Value
RNA id XM_021612661.2
length 3060
RNA type mRNA
GC content 0.51
exon number 14
gene id pex5lb
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46651828 ~ 46803169 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCATTTCCGGAGGGCACGTCAGCGGACGAGTCGCATAGAGCGAGAGTGCGCTGTCTCTTCAGGGGTTGGGACAACCGAAGCTCCATTCATTCTATCCTACTAAAAAATATAGCCCCGAGCGCAATGCTGCTGCAATTTTGAAACTAATACTATTTACAATTGTGTAAATATTGGAAACATGACCCGGGCTCATTGCCGAATCAATACGTTAGTTTGTGAGTAATTTGGCTGGTTTGAGAAACGCCGATCGTTGACTAATGGTCCGGGACCTCTCTTCGCCGATGGGGTAGCAGCTAGCAGGATACGAAAACAGCGTCAACTCCGTGTTCAGTGAACTCCATGAGCAAGGGACAGCCTGTCAAAGCCTTCTGTGGTGAAAAGGTTCAGCAACCAAGTGCTGAACTAGCCTATTCGACTTCAACAATCCTGTTTGACTGAATTATGTACCAGGTGCAGgggaaaggggaaagggctGTTGCCATGGTGCTGAAGGAGCTTCCGGGTAAAAAGGCATCCTCAGAAGGAAACCCCCTCCTCACCGTGACAACCAAGCTGGTCGGTGAGCAGCAAGAGAGCCGCCCGCTGCTGAGCCCCTCCATCGACGACTTCCTGTCAGAGAGCCGCATTGATGGCCCTGTTGTCCGGCCGGTCACCTCCAACACAGCAGTTCTATCCTCAGCCCTTGACCTGGTGGACCTGAGCGAGCCCAGTGAACGCAGTAGCAGGAAGGTCAGCGTCAGGGAGCGTCCGAGCCCCTTGGGGCCCCGTAAGGGAAATTCTAAAAACAGCCCACGGAGAGGGAATAGACGAGATGAGACAGAGCTCATCCATGTGGAGGTGGAGCGCTCATCGAGTGCTCGCACCACACGAGCCCCCGAGAGGGTCTCCCTAGAGTCAGTCAGTTCCTCGTCTCCTTTGGAGAAATGGGAGGAAGTGAATCTTCACCCTGAAGGTGCCCTGAATGACAGCAGGAAGAGAAGATACGAAAAGAAGTGCACCTCACACCACTCCTCCAGTGAATTAATATGGTCAGCAGAGTTTAAAACAAATCCATCTGTGAAAAACTCATTTGAAGTCAATAGCAATGATGACGAGGACCACATATCAGCACTAAAGGACCCAGTACCCCAACAAGTGCGGCCCAGTCTCCGTCACCTCTTGGGCAGACATCATTCCCAGGAGGAGGAGTTTGTAAGGGCAAAGGCTGCTGTAGAGTCGGACACAGAGTTCTGGGATAAGATGCAGGCAGAATGGGAGGAACTGGCTCGCAGGAATTGGCTCGAGGAAGAAAATGAAGGCCCGATACCACCCAGCAGCTCTCCAATTGAGAAGGGCTACTACTTTCACACCAACAACCCGTACAAAGAGTGGCCCAATGCTTTTGAGGAAGGGCAGCAGAAGGCCAGAGATGGAGACCTGAACAATGCTGTCCTGCTACTGGAGGCGGCCATTTTGCAGGACCCATCGGATTCGGAGGCTTGGCAGGTTCTGGGCACCACACAGGCTGAGAATGAGAATGAGCAGGCAGCCATCGTGTCACTCCAGAGGTGTCTAGACCTCCACCACAACAACTTGCAGGCCCTCATGGCCCTGGCGGTGAGTTTGACCAACACAGGCATGCAACAGGACGCTTGCAAGGCCCTGCACCGATGGATCTGCCACAACCCCCGTTATAAACACCTACTGCCAGGGAGCCGGAGCCCACTGCTGCAGGGGTCCCCCACCACACCGCGTAGGGGTCGTCCCCATACGCCAACCTCTTGcAGCCAGCTGGCGGAGGTCAAGGGATTGTATCAGGAGGCCGTCTTGCTGAATACAGATGGGGTGGACCCGGACCTCCAGACAGGCCTTGGGGTCCTGTTCAACCTCAGCTCCGAGTTTGACAAGGCTGTGGAGGCCTTCAAGTCAGCCCTGTCTGTCAGACCTGAGGACTACCTGCTGTGGAACCGCCTGGGGGCCACACTGGCTAATGGGGACCATAGTGAGGAGGCAGTGGAGGCATACACCCGGGCCCTGGAGCTCCAGCCGGGCTTCATCAGGTCCCGCTACAACCTGGGCATCAGCTGCATCAACCTGGGAGCGCACAAggagGCAGCTAGTAACttcctgactgcccttaaccagcagAGGCAGAGCCAGAGTCACCAAGTCATGTCGGCTAACATCTGGGCTGCCCTTCGGATCGCCCTCTCCATGATGGACCGGCCCGAGCTCTTCCAGGCTGCGAACCTTGGAGACCTGGACCGACTCATGAAGGCCTTCGAAATGGGGCGGGTTATGTGACCAGGTTTAGTGGGGCTCCTCAGATAAACAGTTCGCTAATTGGCTAGAGGGTTGCCAGATTGGTGACCAAGAATGGCTTCTGTTAATGTAAAGCTAAATTAATGTCTGACAGAAGAGAGATGAATGTTATTGAAGATCGGAAAAAGAGGTGGGATTGTAGAATAATGGAGGTGTTCTAGTATTTGAAATGCCATTATAGTGGAAATATTGGAAGACCTGAACCAACTTGGGAAATATACACACTCTTTTATTTTAGACTGGCCTCCAGCAGCTGAAATTAGGCTACAATAACGCAGCCATAGATCAAACGTGATCATTTATTCCCTATTTGTTTTGGTATGGCACTGTATACAACTTCTGCTGTGTGGTCATATACCATCTACTTTAAGTGGATGGGAAGATTGTTTTTAACCCGTTGAAACGGATTTGCACCACTGCAATGGGGTACTACTATTTAATTTTTATCCCCGAAGAGCACAACGTTGACTGAGAAAAGGAAAGACAGAGTCTGCTGTAAAGTAGAGGAAAAACAAGCCATGCATGCCCGGCAATCACATTGTGAAAGAACTGAAGCCTTATACTAAATGAAATTATATCAAATGCACAAGTCGTAATCACTTTTATAGACAGCAGGTACTGATGGTCAAATTgtgtgtaatagtatagactagAGTCCTCTTGTGTATAGTTTTTTGTCATTTTGTACATACCTGTATTTATTTGGAATATCACTTCCATGCATTGCTCCAAGTACAGTATGTAATAAATGACTGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU811491 lncRNA downstream 15903 46635674 ~ 46635925 (-) True G713891
TU811490 lncRNA downstream 18213 46633362 ~ 46633615 (-) True G713890
TU811489 lncRNA downstream 19978 46631526 ~ 46631850 (-) True G713889
TU811487 lncRNA downstream 22029 46629582 ~ 46629799 (-) True G713887
TU811484 lncRNA downstream 24687 46626609 ~ 46627141 (-) True G713884
TU811623 lncRNA upstream 47535 46850703 ~ 46851098 (-) True G714020
TU811776 lncRNA upstream 58148 46861316 ~ 46861673 (-) True G714168
TU811798 lncRNA upstream 96256 46899424 ~ 46899756 (-) True G714190
TU811801 lncRNA upstream 100395 46903563 ~ 46903762 (-) True G714193
TU811808 lncRNA upstream 111096 46914264 ~ 46951738 (-) True G714200
XM_021612657.2 mRNA downstream 94937 46527650 ~ 46556891 (-) True si:ch1073-184j22.1
XM_021612654.2 mRNA downstream 188136 46462625 ~ 46463692 (-) True sft2d3
XM_021612647.2 mRNA downstream 234249 46407733 ~ 46417579 (-) True dusp28
XM_036985501.1 mRNA downstream 256710 46388942 ~ 46395118 (-) False LOC110529956
XM_021612671.2 mRNA upstream 212717 47015885 ~ 47027075 (-) False nebl
XR_002474465.2 mRNA upstream 214368 47017536 ~ 47027075 (-) True nebl
XM_021612670.2 mRNA upstream 224026 47027194 ~ 47035362 (-) True dnajc1
XM_021612673.2 mRNA upstream 247905 47051073 ~ 47057707 (-) False LOC110529973
XM_021612672.2 mRNA upstream 247905 47051073 ~ 47067973 (-) False LOC110529973
TU811283 other downstream 326147 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 1193580 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 2112324 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 3480746 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 3931129 42719771 ~ 42720699 (-) True G709272
TU811888 other upstream 248299 47051467 ~ 47057660 (-) True LOC110529973
TU812043 other upstream 375256 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 1485774 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 1739123 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 1956744 48759912 ~ 48761163 (-) True G716463

Expression Profile