RNA id: TU813969


Basic Information

Item Value
RNA id TU813969
length 4222
lncRNA type read_through
GC content 0.40
exon number 4
gene id LOC118965521
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 48531522 ~ 48536626 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcatcctgagaccatgtgtggggttgcttctcagccaatcgagtgggctcactcacaattttaaGAACACAGCcttgaataaagaatggtaccaacacatcctccgagagcgacttctcccaaccatccaggaacagtttagtgatgaacaatgccttttccagcatgatggagcaccttgccataaggcaaaagtgataactaagtggcttggggaacaaaacatcaatattttttgTCCATGGCCATGAAAGATCCCCAGACCGTAATCCCATTGAGagcttgtggtcaatcctcaagaaggctggtggacaaacaaaatcccacacattctgacaaactccaagcattgattatgaaagaatgggctgccatcagtcaggatgtggcccagaagttaattgacagcatgccagagcGGATTGCAGAGGTTTTGAGAAAGACGGGTCAACacttgactctttgcatcaacttcatgtaattgtcaataaaagcctttgacacttatgaaattcttgtaattatacttcagtattccatagtaacatttgACATCTACATGTAGAGATgaaaaaatttttttttagatatactgtaggcctaccaaaGTTGTTGTAGGGCTTTTATTTTACTACATATTGGTCTACCTACTCTGCTGGCGTCTTGACCCAGTGTATGCCGTCATTTGCAACGCAAACCCGGGCGGCAGTGTGTTTAGGGTTATTGTCTGCCTGGGCCTGCAGGACGCAAAGTTCTTTGTTTGTCAGATTAATCATTGGGTCaaaactacagaacagtacaaaacaagCGAAAGAACACACGTGGTTAATGTtctgatatttatttttatatatataatttctTACCGAGCCTTTCCGTAAGTCCACGCAAGTTTCATCAACTGTCTTCTTACTGTAATTAGAATGATGTTGATGTCGTGCCGAGATGCCAGTTGATTACAGATTGCCTTAGCTGATCGTTCGTTATCTTCATTCATCAGGGAGTCGATGGCTTGAATAGTCTCTATTGAAATGAAATACAATGTGAAAATGTGCAGCATACATTAAAGACGAGCAGTCGATTTATTTAAGCATTTTTTGTATTATTAGGCCTACATTAAAGTATCGTagcctactgtacctgttcatCTTCCTGGTCTTTCGAGTTCGGCGTAAAACAGGCATCTGAGGATAGTGTTTGCGAATAGCACTGTCCGCGACACAAATCCCCAAGTCtaccagtttaaaaaaaaatgtctacagTAGATTTTCCGTTCCTCCTGAAAGCACTAATCTGCTCACTTAAATGAACAGAGATCCTGGTCACGGTGCTACAGTATAATCAAAGTGAGGACAATCTGCTGTATACTTATAgcctattgtaacctgaaagTCACGCctttcctccccccccccccaaaacaccaCCCTTGACACAGTTACCATTCAAAAACGagctgttaaataaataaaaaaaatcacattacGACCAAAGAGAACAGACGAAATGGACGTTTTCATCAAGCCAGCTTCTTTCTATGGTGCTACCCGTTCCAGGATTAGGACTGTAACCACCAGAGGACTTGAAAATGAGCTGGAGCTGAGAGATCACCAAAACTAAAGGTGTTTTGGTTTCAGAGCATTTGATATTAAAAAAGAAAAGGTGTGTATATAGCCTATCAATGTgtaggcactgtatactgtataatgAATGTATACTGTATAATAAAATTGATAATTTTGTACTAAAAACCTGACTGTTTTTGCagaactggttaccaacgtaattagaagagTACAAATAATTGTTTTGTATATGGTCTGACATACTACtgatgtcagccaatcagcattcagggctcgaaccatccaccttataattacaaataatttggaTGCTGCAAATTAACTACAAGAACCCCAAACAGATATGTTTGACTAAAAGTCATTTTAAACCtagcttacatttgtatacgatcacgtctcttttatgcgtgggaatacttgggaacagattttcaAAATTCAAATTACTACGAGCTCATTTCCACAatggaaaaataaatacaaaacacgCATGCCAAATTTGTCATGCGTgtcaccagttggggaaccctgccgtatgtgatgtaaacagaggtatctactttcttggggacctgagtattgactggttttcatcaagctgtctgctCAAGAGAAAGCTTTTCACTGTAACCAGTACCTGTAATCGGATTCAgattattaatcaacctaccagggtgtttacaaacactacaagAAGATGATCATCCAcatgatcacaatatagtggctttATCCAGGAAAGCCGAAGTTCCACAAGCTGGGTCTAAAATAGTATATAAGAGCTACACAAAAGATTTGGCTGTGATTGATGTGGATTATGTTACAAATATTTGTTGGTTTGTGATTAATAAGCAGCGCtttatgaatttatgaaattgattCTTCCAATTactgataaacatgcacctgttaactGATTGTCTTTGGTCTGCAGCATTTTGAGTAGAACCTTGTTACTTTGAGTAACGTTCAACAAAACTGCCTGAATGTTATCAGGCTGAGCGCGCCTGTTTGTAGATAACTCGTCAGATTTATCTAGTTTGGTGTGGACATCATCGTATTTAGTTTTGGCTATATCGAGTTATTCCTGTAGCATATGATTTTGTTCCTGTAGAAGACGATTTTGTTGAAGATTTTGTGCTTGTTCATCGTCACACGTTTTTGAAATTACATTTAATAGTTCAGTTTTCAACCGCAGTTCCATAGCTAGCAGAATTTTGCCCTTTTCTGCAGTTGTCATTGGTTTCCCggttctctccacctgtccctTTATGTCTACTGTTACCTGCTCGTGCTTCAGCTGTGAACTGCGGTATTAGACTGATGCCCATTTCGGATGGCAAGACATCAGGGCTAGATTGGAGAGAACCTTTACGAAGCCTGCGCCCGATGGTTGATTTTGGAGAGCGTTGTTTGGTCTGTGATGGgacgttttttttcttcacacaTATCTCGGCTATTAGGCtgttctttagtaaaggttgaatagtctattgttcagctattagcccccctccccaacttgcaacaaatgGTTGTTACTCCCATCACGTTCCTCGCACTTTTCCACGCGTCATTCTCCGCCTGAGTGGCTTGCTTTTGGGTCTGCTGGCAGGATATGGCAGCACCTTCGGTTGTGCATCAAGAATTCTGCGTAGCAGgtttgtatgaaggtctggttattCACAGGCAAATTGTTATATGCTATGGAGGTACATTTGTGTCTTGTTGAGAGCAAAAGttttattttcaatcaaaaaATTGTTCTGAAAGCAAAAACGAGGCTAACAAATATTTTGTAATAGAGCGCAAAACTTTATCCATTTTATTCACAAAATATTTCGagaacaaaaaatgtatttgaaaacaaAACTCCAATTTAATTTCGTTATCAACCACCCTCCATTTTAGCAATTTTTTGAGTGTCAGTTTGGCTACCACCAAAACTGTTCAGCCTTTCTTTCCGACACAAAGGAAGTCATAGCGGACACCTACGAAGGACTATGtgatgatggcatctcagAAGGATGAAAGAACACTGTCTGTCAAATAATACTATTCTGATATGTCAGATGAAGAGTTAGACCAGAAAGTCAGGGCCATGAAGGCCAGGATGCCTCATGGGGGCTTTAAAAACGGTCAAAGGAAGTCTCCAAGCAATGGGCTATCGTGTACAATGGCGAAGAGTTACGGAGTCTTTGCAGCGTGTAGATGGTGCAGGTATCATTGCCAGAATGATCCAGCTTCATTGCATTGCGTGGCAAAAATACTCTGTTCCTGCTCCCCTGTCTCTCGTCCACACTGATACAAATCATGCATGTATAAGATACAACATTGTCATCTTGGGCAGTATTGATTACATTTTCAAGGAAGagtgcgagctgatcaaggggttgaaaatgtagatattgccagatgtATGTTCACTGTCCGAGAAACAGGCTGGCAAAACtgtccataaccagaggtaattaaactgttctgtgttatttttctctcttcccctctgccTGCCTTGATGTACATGGAATCTGTCTCACATGCATTCATTGtaatataatattacaattataatatttataaaacatgtattatgtatttattacacctggataatgaactttcaataaagcgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU814027 lncRNA downstream 180965 48350367 ~ 48350566 (-) True G716289
TU814026 lncRNA downstream 181720 48349598 ~ 48349811 (-) True G716288
TU814023 lncRNA downstream 184488 48346843 ~ 48347043 (-) True G716285
TU813999 lncRNA downstream 223064 48308186 ~ 48308467 (-) True G716261
TU813991 lncRNA downstream 232743 48298565 ~ 48298788 (-) True G716253
TU814141 lncRNA upstream 122991 48659347 ~ 48659569 (-) True G716401
TU814148 lncRNA upstream 138045 48674401 ~ 48674730 (-) True G716408
TU814149 lncRNA upstream 139786 48676142 ~ 48676553 (-) True G716409
TU814206 lncRNA upstream 226971 48763327 ~ 48763613 (-) True G716466
TU814210 lncRNA upstream 234258 48770614 ~ 48770829 (-) True G716470
XM_021612729.2 mRNA downstream 16236 48356004 ~ 48515295 (-) False dlg1l
XM_021612717.2 mRNA downstream 45483 48356004 ~ 48486048 (-) False dlg1l
XM_036985531.1 mRNA downstream 102315 48356004 ~ 48429216 (-) False dlg1l
XM_036985532.1 mRNA downstream 102315 48356004 ~ 48429216 (-) False dlg1l
XM_021612708.2 mRNA downstream 188521 48329684 ~ 48343010 (-) True LOC110529989
XM_021612739.2 mRNA upstream 585693 49122049 ~ 49140272 (-) False LOC110529994
XM_021612740.2 mRNA upstream 585693 49122049 ~ 49140273 (-) False LOC110529994
XM_021612741.2 mRNA upstream 585693 49122049 ~ 49140712 (-) True LOC110529994
XR_005053034.1 mRNA upstream 860443 49396799 ~ 49396853 (-) True LOC118965653
XM_036985545.1 mRNA upstream 906352 49442708 ~ 49490744 (-) False LOC110529999
TU813564 other downstream 241950 48288942 ~ 48289581 (-) True G715865
TU812043 other downstream 1352795 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 1473871 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 2205850 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 3073283 45457777 ~ 45458248 (-) True G712814
TU813956 other upstream 5935 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 223556 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 245765 48782121 ~ 48782515 (-) True G716480
TU814229 other upstream 252165 48788521 ~ 48788962 (-) True G716488
TU816366 other upstream 1249318 49785674 ~ 49837696 (-) True G718489

Expression Profile