RNA id: XM_036985543.1


Basic Information

Item Value
RNA id XM_036985543.1
length 2536
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110529999
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49442708 ~ 49491248 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCATTTTTAAAGAAGCGTATATTCATTGTTAGAGCTGCCACTTGAGTATCTCTGTTCAATATAACGGATAATCTGTGGCTGACTGGAACATCTCAGTTGTGTTtaccttaaaaaatatatatatatttttgatacACACGCACAAGGACAAAATGTTACAATGTAGCATATAGAATGCAACAAAAGCTGCGTGCCATCGATGGAACACTGGATAGGCTACTTTGTATCACTAGACCGGATTGTACATCACCCTTCATCACTTTTGGGTTTAGGTTCACGAGCGAATATCGCACTGAAATTCAATTGGTCAACAACTAATCGATGCAGCATTTGAACCAATCACATTTAACAACGAGCCCCAGAGCGCGTATAATTTTTGGGACAGTTATAAAATCGAGGCCAGAAATCTCACAATACCAGGCGGAGagcccctttctctctcaccaCACGGAAAGCCACAACGCTTGGCCTCattgaaaagaaagaaagaaaggaaatgCAGAGGGATATAAGATGGCAGAGCTACAAATGTTGCTAGAGGAAGAAATTCCAGCCGGTAAACGAGCACTCGTGGAAAGCTACCAAAATCTGTCGAGGGTTGCAGAATACTGTGAAAACAATTATGTACAGGCCCAGGACAAGAGGAAAGCTCTGGAGGAGACTAAAGCCTACACCACCCAGTCTCTGGCGAGCGTTGCCTACCAGATCAATGCCTTAGCCAACAATGTGCTGCAGCTGCTGGACATCCAGGCCTCGCAGCTGCGCCGGATGGAGTCCTCCATCAACCACATCTCTCAGACAGTGGACATCCACAAGGAGAAGGTGGCACGGCGAGAGATCGGCATCCTGACCACCAACAAGAACACGTCGCGCACGCACAAGATCATCGCCCCAGGCAACATGGAGCGGCCAGTCAGGTACATCAGGAAGCCCATCGACTACACGCTGCTGGACGACGTGGGCCACGGTGTCAAACAACATGGCAACAACCAGCCagcgaggggaggaggaggaggggggacatTATCGAGGACCAATCCACCGACACAGAAACCCCCGAGCCCACCCATGGCTGGTCGTGGAACTCTTGGgCGAAACACCCCATATAAGACCCTGGAGCCAGTCAAGCCTCCAACGGTGCCTAACGACTATATGACCAGCCCAGCACGACTAGGCAGCCAGCACAGCCCTGCACGCACTGCCTCCCTCAACCAGAGACCCAGAACACACAGtgGCAGCAGTGGGGGTAGTGGCGGGCGAGAGAACAGCGGCGGCAGCAGCATAAGTGTTCCTCTGGCTGTGcccactccctcccctcccagcctGGGACCAGCAGTACCCCAGGGCCCAGGCCTGGGTCCCATCCCCATGTCCCAGTTTGGCACCATCTCGAGGCAGGTCTCCCGCCACAACTCCACCGCCACCTCAGCCTCCATGGTGTCGGCCACAGGTACCTACCGCCGGGCGCCCTCCGGCAGCTCCCATTTCTCCATGTCCCAGCAGCCCCACCTCAACGGGGGACCCGCATACCCCCAGAACTTAGTGTCTGtggctcctcctccccctcctatgGTCCAGCTGACTCCTCAGATTCCTCTGACGGGCTTTGTGGCCAGAGTACAGGAGACCATAACAGACAGCCCGGACCCCCTTCCACCGCCCCCTCCCGAGGACGTTGTCATGTTTGAGGAGCCCTCGCCCCCTCCCCCGCCCCCACCAGTGGACTACCAGGGGGATGAGGAGGCGGCCGTGGTGCACTACAATGACCCTTATGCTGACGAAGACCCCCACTGGGCCCCCAAGTCCTACGTAGAGAAGGTGGTGGCCATTTATGACTACTCCAAGGACAAGGAGGACGAACTGTCCTTCATGGAGGGCTCCATCATCTACATCATCAAGAAGAACGACGACGGCTGGTACGAGGGCGTCTGCAACGGCGTCACTGGCCTCTTCCCCGGCAACTACGTAGAGTCCATCATGCACTATGCAGACTAAGGGCGGACATTTTGACAGTGCAAAAACGGCAAGATGTTACAAAAAAACGTGCTGAGTTTAGTATTTGAAACGATAAGGTAGCTTTTAGTAAGATTTTGGCATTTGTTTTGCACGGTCAAATTGTCCTGAAAGCCCCCCATCTCTTATCCACACAGAAAAACGTCAATCTTACTTTTACAGAAAACAAAAGAaagaataaacaaacaaacaaacaaacgtaGTGAAGTGCATTGCGACATGAGTGACCGAATGTTTGTTTTTGTCCGTGTCCAAATTGCAATGTTACAAAACAAGCAAAATATTCAATTTACTATGCTACATgttggagggaggggtgggttggggaggtggGCCAAGGGATAGGGAATAGGAGTTTTGAATGCTAAAAGATATGAACATTAATTTGCTTATTTCTGGTGAATTTATTTAGTTTtgtttacagtaccagtcaaaagtttggacacacctactcattcaagggttttactattttctacattgtagaataatagtgaagacatcaaaactatgaaataacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU815225 lncRNA downstream 65996 49376510 ~ 49376712 (-) True G717452
TU815223 lncRNA downstream 68652 49373563 ~ 49374056 (-) True G717450
TU815219 lncRNA downstream 72776 49369688 ~ 49369932 (-) True G717446
TU815213 lncRNA downstream 82730 49359616 ~ 49359978 (-) True G717440
TU815198 lncRNA downstream 96819 49345547 ~ 49345889 (-) True G717425
TU815307 lncRNA upstream 21827 49513075 ~ 49514522 (-) True G717527
TU815308 lncRNA upstream 25452 49516700 ~ 49516983 (-) True G717528
TU815311 lncRNA upstream 28906 49520154 ~ 49520498 (-) True G717531
TU815312 lncRNA upstream 30358 49521606 ~ 49521933 (-) True G717532
TU815314 lncRNA upstream 40739 49531987 ~ 49532535 (-) True G717534
XR_005053034.1 mRNA downstream 45855 49396799 ~ 49396853 (-) True LOC118965653
XM_021612741.2 mRNA downstream 301996 49122049 ~ 49140712 (-) True LOC110529994
XM_021612740.2 mRNA downstream 302435 49122049 ~ 49140273 (-) False LOC110529994
XM_021612739.2 mRNA downstream 302436 49122049 ~ 49140272 (-) False LOC110529994
XR_005052888.1 mRNA downstream 906082 48531522 ~ 48536626 (-) False LOC118965521
XM_021612751.2 mRNA upstream 33490 49524738 ~ 49529686 (-) True LOC110530002
XR_005053024.1 mRNA upstream 85855 49577103 ~ 49578807 (-) False LOC118965614
XM_021612754.2 mRNA upstream 110291 49601539 ~ 49612229 (-) True LOC110530004
XR_002474470.2 mRNA upstream 138329 49629577 ~ 49630769 (-) False LOC110530005
XM_021612756.2 mRNA upstream 144227 49635475 ~ 49647848 (-) False LOC110530006
TU814229 other downstream 653746 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 660193 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 681545 48759912 ~ 48761163 (-) True G716463
TU813956 other downstream 826185 48542291 ~ 48616523 (-) True dlg1l
TU813564 other downstream 1153127 48288942 ~ 48289581 (-) True G715865
TU816366 other upstream 294426 49785674 ~ 49837696 (-) True G718489
TU816422 other upstream 375382 49866630 ~ 49889252 (-) False LOC110530011
TU817090 other upstream 1445680 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 1761107 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 3269791 52761039 ~ 52761451 (-) True G721275

Expression Profile