RNA id: XM_036985551.1


Basic Information

Item Value
RNA id XM_036985551.1
length 2639
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC110530006
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49635475 ~ 49647848 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGTATGCCAACGAAGAAGGAACGTGTCCGTCCCACTAGACCTCTCAGCAAGGTGTCTGAACCACCACCGCTGTCGAGGCAAGCCTCCCCGAAGACATCCTCTCCCTAGGCCTCGATAAACTTCTCCCACCGTTAGTAGCCCCATTTCTCAACCATGGCGACGAGTGCGAAGCGAAAGCAAGAGGAGACGCATCTCAAGATGCTTCGGGAAATGACTAGCCAACCCCCGAATAGGAAGTGCTTTGATTGCGACCAGCGCGGCCCGACTTATGCCAACATGACAGTGGGTTCCTTCGTCTGTACCACCTGTTCTGGCATCTTACGAGGGCTGAATCCCCCCCACAGAGTGAAGTCCATCTCTATGACCACCTTCACGCAACAGGAAATCGAATTCCTACAGAAACACACCAACGAGGTTTGTAAACACATCTGGTTGGGGCTGTACAATGACCGGACATTGGTTGTTCCAGACTTCCACGAACCACAGAAAGTAAAAGAATTCCTCCAGGAAAAGTACGAGAAAAAAAGATGGTATGTCTCTCCAGACCAGGCTAGAACGGTAGCCACAGCCCAGGCTTCCAAGTCGGGCACCTCAGCCAGCAGCACAGGCAGCACCCCGGAGGTCCAGCCCCTGAGAACCCTGCAGCTTAACAAGACCCCACCAACGCGTCAGtCGCCGGTGGTGGTTCGCTCCCAGGCCTATCCTATAGTTCAGGAGAAGAAGTTTGACCTCCTATCTGACCTGGGTGGAGACATCTTTGCCACTCCGCCCTCTCAGGCTGCCAGCAACTCCAACTTTGCCAACTTTGCACATTTCCCGAGCCAGTCAGgGCGAGGTGTCCCAGTGCCGTCGGTGGCCGGTGCTGCACCGGCTCCGTCCCAGCTGGGCACTTCAGCAGAGGACCGCTACGCTGCTCTTGCTGAGCTGGACAACGAGCTGAGCTCTTCGGCCCCCACAGGGAGCAGTGTCCAGGGGAATATGTTTGGAGCTGTGTTGGGAACCTCGCCTGCCCAGACTCAGTCAGTATTACCCAGCATGCATGTGCAGCAAGGCTTTGGAGCCATCCCGTCCAATAATCCATTTGTTGCCGCCGCCCCGGATATGGCCACCAACCCCTTCCAGACTAATGCCTCGTTTGGCACAGGCTCTATGAGTATGCCTGCTGGCTTTGGGAACCCCTCCTCTTACTGCCTCCCGACCAGTTTCAGTGGGACATTCCAGCAGCCCTTCCCTGGCCAGGCCCCTTGCCCTTACACCCAGCCGGGGGCCTACCACCCCCAGCAACCCAACGGCCCTGGTGGATACCCAGTCTACGGGCAGACCAAGCCCTCCATGACCCCCTTTGGGCAGCCCATGGCTGGGCCGGGGATGACCAATAACCCATTCATGGCGGGAGCCCCGGCTGGATCCTACCCTGCTGGAGGCTCTTCCACCAACCCCTTCCTGTAGTGCGCCTATCTCCTCGTCAACACCACCAGGGGGCAGCATGCAGCACCTATTCAATGCACCGGCTCCGTCACACCCTGTGATGTGAACGTACAGTTCTGAAACTCTGAATTCAAGTTTTTATTAAAAGCTTAGTTTATGACACTATAAAGGACTATGGGATTTGGGACTGCCATGGAATGATGCCCTTGGACTAAATACATTCtctattcatttattttttttgttcatttgACAGCTCTTTATTGTGCATATCGGCATTTGTAATCACATTAAAATACAAGGTATAATAAGGACTTGACATGGTTGGGCAACATTATGGATGTGCCACTATGTTTGTACCAGTGTGTTTATAGGATAACAATCAGGGTTGTATACAAGTCTAGGAGGGAACTGAGGTGACGTGAAGAGTTTTTGCCTCGAATTATGTGAATTATCAGGCTGGCAGAGGAGATATGCACCTAATTCTATTTGAGGGGCTACTGGTAGTCAAATTCAGTATAATTTAATTCCGTGTAAAATAAACTATGTAATGTGTAACGGTTTCAATGGGCATGACGCCTCCGCCTGTAGGTATGGCATCCGGGAAAGGGACTTTTATTTGGTCCATAATTATTACCACTATTACTGAACGTGGCCCTGTTCTTATTAGGCTCAAAACACCATATAGTGCTATCCCAAGGCGTTGCAACAGCATTTTGCCTAGCGGTTTACAAAACCGTTGAATAACCTTGAATACAACCCAGGTCTTTTACCCttactcttttttttatttatttgttactaGGATAAGTCCCAAGTGTAACAACAGCCCAAAcacactaacgttagctagttttgAGACCGTTTGGAAAGGGAACAAATGcctggtgaaaaaaaaaaagagacccCAGACTCCAGCACTAGCCGTTTGGATGACAGGCAGGTGTCTACTGCAGCAcaaaaagagagggaaggagagtagGGAATAGAGAGGAAAGGTTCTTGTGCTCTCAGCGAGCCCTCTCCATGTAACCTGACCCGCATGTGTGTAAAAACACCTGAGAAGTTTGTTTTTATTTGGAGAGATGGTTACTTGTGGCACCCAATCACTTTTAATGAATTTAAACGTTACTTGCCATTACAGGAATATGTAAGTCAATGtgtacatatataaatatatgtataaaTATTAAAGATTTTTAACTACAA

Function

GO: NA

KEGG:

id description
K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU815397 lncRNA downstream 4936 49629592 ~ 49630539 (-) True LOC110530005
TU815305 lncRNA downstream 41731 49591230 ~ 49593744 (-) True G717525
TU815351 lncRNA downstream 56860 49577761 ~ 49578615 (-) True LOC118965614
TU815345 lncRNA downstream 61377 49573848 ~ 49574098 (-) True G717565
TU815340 lncRNA downstream 67899 49567369 ~ 49567576 (-) True G717560
TU815382 lncRNA upstream 2743 49650591 ~ 49683675 (-) True G717596
TU815408 lncRNA upstream 19888 49667736 ~ 49672776 (-) True G717617
TU815413 lncRNA upstream 30369 49678217 ~ 49683069 (-) True G717622
TU816338 lncRNA upstream 93937 49741785 ~ 49742817 (-) True G718461
TU816415 lncRNA upstream 202393 49850241 ~ 49850528 (-) True G718537
XR_002474470.2 mRNA downstream 4706 49629577 ~ 49630769 (-) False LOC110530005
XM_021612754.2 mRNA downstream 23246 49601539 ~ 49612229 (-) True LOC110530004
XR_005053024.1 mRNA downstream 56668 49577103 ~ 49578807 (-) False LOC118965614
XM_021612751.2 mRNA downstream 105789 49524738 ~ 49529686 (-) True LOC110530002
XM_036985543.1 mRNA downstream 144227 49442708 ~ 49491248 (-) False LOC110529999
XM_021612759.2 mRNA upstream 85 49647933 ~ 49654537 (-) False zgc:110269
XM_021612758.2 mRNA upstream 85 49647933 ~ 49655158 (-) True zgc:110269
XM_021612765.2 mRNA upstream 218424 49866272 ~ 49909160 (-) False LOC110530011
XM_021612766.2 mRNA upstream 218424 49866272 ~ 49909160 (-) False LOC110530011
XM_021612767.2 mRNA upstream 218425 49866273 ~ 49921500 (-) False LOC110530011
TU814229 other downstream 846513 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 852960 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 874312 48759912 ~ 48761163 (-) True G716463
TU813956 other downstream 1018952 48542291 ~ 48616523 (-) True dlg1l
TU813564 other downstream 1345894 48288942 ~ 48289581 (-) True G715865
TU816366 other upstream 137826 49785674 ~ 49837696 (-) True G718489
TU816422 other upstream 218782 49866630 ~ 49889252 (-) False LOC110530011
TU817090 other upstream 1289080 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 1604507 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 3113191 52761039 ~ 52761451 (-) True G721275

Expression Profile