RNA id: XM_021612766.2


Basic Information

Item Value
RNA id XM_021612766.2
length 4985
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110530011
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49866272 ~ 49937001 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcctctcgctctctccgtgcCCCTCTCATTTATTCTGTGCCCCGGAGAATTCCTCATCCAAACCTCAATCACGTATGATTGCGTAGAGTGAGAGAGATCGAAAGGTGAGCCCATTCACGCTTGACTGTTCGGCGATAGCACACGCCACACATCCATACGGAACGCATTGGAAATACTCCTTTAGGCTACACCATATGGTTTTGTGGGCAATAAGAAAAAAAACGCGTCTGGGGAAATCTTTATAGCCTACCTACggacaataataacaacaaaacGCATATTTGTTTTCTCTCATCGTAAAAGCCCAAAtcaccatgttgctgctgcattcTCGCAGACCATTGTCTTTCCCCGACAGTGCTCGCGGTGTCTGCTACTGGTAGAGGTGCTGGCGCGCTGGCACAAATGCCCGTAGTCCTCGAGAGCGAGTGGGGCAGCCAAACAGACAGTCGCCTAGCTCTCGTCGCCTCTCGATTCGGCGTTGTATTTGGCTTATGGCTTAATACGTTGAAAAGTTACGAGGCGTTGCATTAACGCAGCTGTTGATGAAATTGTTTACAGTGGAGTTTAAGGTGTCTCGAATGCATTACGGTGCTGGATATTTTGCCACTTACCGACTTTCCGTGCACATGAGGATTGCACAGAGTCGATCTTGTCAGACTTGGCGCCATTCAACTGGAATACCTGAGACTCAATtgtgtgcacgcacgcacgctccgACAACACACAAACTTATTTACCACTGTTGTGACATTTTTTTTGAATAGCCTACATTTTGTAGCCATGCTTTTATCCGTGCGTAAATTTGCGGCATATGTTTTATGAGTCATTGGTATTTGACGCTTTCCCTGCAAGGAATTTGTGACTGGTATCGTTCCCCAGGATGCAGTATGGATGCCCGATGATGCGCGGGACTTGGTGGATTTTCTAAAGGGGATCGGAATGACATTTGAGTAAACCCCCGTGGACCGTAAATTCGATTTTCTCCACCCGGTTCCTTTTGCACCAAACAGCCGCACACAACTCGACATCTGTCCAACGATTCTGGGCTCGGTTTCGGTTCGGCTCGCCCGCGAGGGAGATGGCCGCAATCGCCAGCTCCTTGATCCGACAGAAACGCCAGGCGAGGGAGTCAAACAGTGACCGGGTCTCCACTACTAAACGGCGCCCCAGCCCCAGCAAAGACCCACGTTCCATATGCGAGCGGCATTTCTTGGGGGTCTTCAGCAAAGTCCGTTTCTGCAGTGGCAAGAAAAGACCAGCCGCTCGAAGGCGACCAGAGCCGCAGCTGAAAGGCATCGTGACACGATTGTTCAGCCAGCAGGGCTTCTACCTGCAGATGCAGCCGGATGGCTCTATCGATGGCAGCAAGGACGAGAACAGCGACTACAcactgtTTAATCTAATTCCTGTGGGTCTGAGGGTGGTGGCCATCCAAGGGGTGAAGGCTGGCCTCTACATTGGAATGAACGGAGAAGGATTCCTCTACAGCTCAGAAATGTTCACGCCGGAGTGCAAGTTTAAGGAGTCGGTGTTTGAGAATTACTACGTGATCTACTCGTCCACTGTGTACCGGCAGCAGGAGTCCGGTCGGGCCTGGTTTCTAGGCCTTACCAAGgaaggccaggtcatgaaggggAACAGGGTCAAGAAAACCAAGCCCTCCTCACACTTTGTCCCCAGGCCCATTGAAGtgtgtatgtacaggGAGCCGTCGCTGCATGAGATTGAGGAGAAACAGCGCTCCAGGAAGAGCTCAGGGACTCCCACCATGAACGGAGGGAAAGCTGTCAACCAGAACTCCTAGCAGCAGGGCCCCAAGGGTGGGGGGCCCGGGTCCCCCCTCTCTtaaatagaggggagagaggctaCAGACCCCCTCACCAACATGCCCTCTGAAGGGATGGGCCGCCATGAGGGGGAGGAGCTACACCCAAGATGACAAAAAACTGAACTCTCGCCTGTGAAAATCTTTTAGACGAATATCAAGATAAACCCAgaggaaaacaacaacaaaaaacaacaaaaaacattttcaatCAGGAGTTGACCTACGTTTTAtgcaaaaaagaaaaaaaagctgtGACAAAGGAATGGTGGTCTCTTCACAATACAAATATCTATCGTTTCCAATTTAAGCTGTGAAAAATTAGCTTTAAAGACATGTTTAATTTCCCATGCATTGATTTTATGAATGCTATGGCACCCTCACATGCTTAATTGTGTTACTGTTGTCCAATAATAACAATATTACTTATGTGTTGATAACTCTTCATCCCAATTTAGTATCATGGGTATTCCGTTTTTCGTTTGAGACTGTAGACGTGAAAAATTGTTGGTATTTTTTTATTGCTTGACATTGACTGCACTTTCACACTGCATACACTGGTGTGAGGGTAAAGAATGAATATATATGAGAAGTCGCTGGTGGGCTCGGTAGGAACAGGAATGGGTGAGTGGGATGGCTTTTGCTCAGGTGATGTACTGTCGGAGTGGAATATCTCCTATCTCCACATACTCTTTGATATGACAGGACTAGACAACTAAAATCAATATGGCGGCTACTCCACCAAGCCTCATAGTAGTCCTCTAGCATATTATGGTGCGTTCGAGTGCGGATGGAAATTTGGAAATACAAGTTCCCGACCCAGAAATAAGGATTGAACGACCATCAAAGTCTGAGTTCCAAGTGGGAAACACGGTCCAGAATGAAGATACTGAAGTTTACGAGGTGTGACCTTTCACCTTTTTCGACCACTAGACGATAAAAGAAAGCCATTTACAACCTTAACCATCTGATTAATGTAGCTCGGTGGATCCATACAGTATATAGTTTGACATATTGTCAACATAAGCAACGTTAGCTAGATTAGCCATCTAGCAAGAATGTCATTGGTTGAAGAGTTATTCTGACTTCAAAAGCACTTGAAAGCACTCATGTTGTATATACAACTTCACCAACTGGGAAATATTTGATTCCGAGGACCGTTCGAACGCACCATTACTCTCAATGATCCAGTCCTGTGAACTTAATGGTCAAGAGGGAAAGGATAGCCTTGTAGTAGTATGAATAATCTGGCAAAGTGGGTATAGCCAGGAGGAAAAAAGACTGATAGAGCTTctggttgtttttgtttggtgtGCCAGTACTAATAAGGGCATTTCTTTCTAATAAGGTCTGGGTTGGCCAATCCTGGGGGGAAATGCAATATTCTCTCCAGAAAAGGAAACTTGGCTAGCATCCGCCAATCAAGGATTCTTTCATGAACAGGTCTACTTCACCTCTTTATGAGCTTTGACAAGACTTTCTTCGAAGTGCGTCAGAGAATGCTTTTAGTCGGTACAAATAAATCATGAAAATATCCTTGGGAAGGCACGTTGTTGTGGCTTGTGTAAGGGCTCAGCAGACTCAGGCTGCTTGGGGCTAAGGTGATTGTGAAAGCTATCCAAGTCCCAATACTCTTAAGAAGCTTCCGCTCCTTGTGTCTTTATCTTTGTTATCAGTGCACTGAGCAGACTAGAAATGTCACAATAATCGGTTGATGGGGTGTAGCGCATTCATTTGATGTAATTAGTCTCTttatatctgtggccaatgaGGGAAAAGAAACTAAGTTTTAAGGTACTTTTCGACAAAGCCCCTGTgagctcctcctcttccatcaATACCCTTTCTCCTACGACACTGTAATCAATAATAACCTAGCACAATGCAACGGGAAGGAGCCCAGTCATCCAAAaccaacaaaaacaaaatgtggatgCCGGAAGGTTCTTTTGCCCTGAGAGTCTGTAAATATTTCACTTTTTTTGTACTTACAGGCTGGCATCCCAATGGCTTCCATCTCAGTAGGTTTTGTGAGCCATGAAATGAGCCGATTGCTGTATTGTGGAAATGAGCCCCCGCCATTTCATAAATCAAATGTAGGAGAGTGGCTGTATATATGAAGAGTAAAAAGGCTGGTTAAACCAGCAGGGAAGGCAGGGAGGAATCTCCCCCATCACCAAGATGGAGAAGTCACCATGTCCACTGATCCTATTGTTCGCCTAACTCAGGAAGTCCCACTCCAGTCTTATGAACGGAGTCTGACAACAAGGCGGGCCACCCTTGCCCAGCACCTAATGCACAAAGCCTGGCCAAAGGTGTGGTCTTGGGGGGGTTGGGTCAGGGGTGTTGGTGGCAGAGTGGGGGGTCTGGAAGTCTTGGGATCTGGCCAGGGCATGAGATAGGGGATGTCAGGGTGTCATGTCAGACACTTCCTCATTTAACTGCGGCAGGTAATGGCAGAAGACCAGCACAAGTCTTCCACTGGGATCAGGAGAGAGCTGGGCTCAGTTCTGCAGTAGTTGCTCCAGTTTAAATAGCCCAAAGGCACAGATCTAGTAATCGGCTTACTCTTCCTCAGttataaccttaaccattaggggaTAGGGacgcaaaactgaccttggatcagcaTCAACTTCATACTACTCGGAAGGATGTACTTTACATAACCTGCTGGCAGAGAAAAGAAGGGAAGATAGAAATGAGAGGTTAAGAATAGGGAGTGAGAGTAAAATAGGGGATATGCGAGTGAACTAAGAGAGCACTTTTGGGGGACAAAATGAAAATGCCAGGGGCTCAATACTGTGTGAAGAGATATTATATTTATGTTTAAGTTTGCAAATTATTTCACCGTAAATGAAACACAGGCATATATGCATTATGAATTGTgagatgaaaaaaaaaatgcattgatATTTAAAAATCAGAATGAAGTTAGTGATTGTTTAagaataaaaaatacattatcaAAAGCTTTCACTTATTTATTGTACCGCTGTGTTCTTGTTGATAGCCTTGTGCACTGTATTCTTCCCCAAAAAGATGACAACAACCCCAAAAAGACTCGATTTCATGTAGAGTATAACttcttctaccctctctcccaGATTTCATGTAGAGTATAACttcttctaccctctctcccagatttcatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU816427 lncRNA downstream 1539 49864505 ~ 49864733 (-) True G718546
TU816425 lncRNA downstream 5489 49859964 ~ 49860783 (-) True G718544
TU816419 lncRNA downstream 10873 49855104 ~ 49855399 (-) True G718541
TU816415 lncRNA downstream 15744 49850241 ~ 49850528 (-) True G718537
TU816338 lncRNA downstream 123455 49741785 ~ 49742817 (-) True G718461
TU816426 lncRNA upstream 11783 49920943 ~ 49921141 (-) True LOC110530011
TU816461 lncRNA upstream 14901 49924061 ~ 49924328 (-) True G718580
TU816462 lncRNA upstream 15482 49924642 ~ 49924880 (-) True G718581
TU816471 lncRNA upstream 25673 49934833 ~ 49935036 (-) True G718590
TU816475 lncRNA upstream 34556 49943716 ~ 49944228 (-) True G718594
XM_021612758.2 mRNA downstream 211114 49647933 ~ 49655158 (-) True zgc:110269
XM_021612759.2 mRNA downstream 211735 49647933 ~ 49654537 (-) False zgc:110269
XM_021612756.2 mRNA downstream 218424 49635475 ~ 49647848 (-) False LOC110530006
XM_036985551.1 mRNA downstream 218424 49635475 ~ 49647848 (-) True LOC110530006
XR_002474470.2 mRNA downstream 235503 49629577 ~ 49630769 (-) False LOC110530005
XM_021612768.2 mRNA upstream 55754 49964914 ~ 49970082 (-) True LOC110530012
LOC118965625 mRNA upstream 74229 49983389 ~ 49986205 (-) True LOC118965625
XM_021612771.2 mRNA upstream 184337 50093497 ~ 50095929 (-) True LOC110530015
XM_021612772.2 mRNA upstream 428571 50337731 ~ 50366270 (-) True LOC110530016
XM_021612779.2 mRNA upstream 503820 50412980 ~ 50434787 (-) False LOC110530021
TU816366 other downstream 28576 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 1077310 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 1083757 48782121 ~ 48782515 (-) True G716480
TU814203 other downstream 1105109 48759912 ~ 48761163 (-) True G716463
TU813956 other downstream 1249749 48542291 ~ 48616523 (-) True dlg1l
TU817090 other upstream 1027768 50936928 ~ 50939471 (-) True G719151
TU817704 other upstream 1343195 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 2851879 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 3554022 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 3588988 53498148 ~ 53499730 (-) True G722459

Expression Profile