RNA id: XM_021612810.2


Basic Information

Item Value
RNA id XM_021612810.2
length 2477
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110530040
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 51032565 ~ 51067801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTAGAATGAGAAAGCGAATGCAATGCAGCCTTAATTAAccctagctagctagactatcttcgTGAAGGGGGTAGCTGCATCCCAATATGGCGACCGGTTGTGTCGAAATAAGTGGGTGTATGGAAAGCGAATCGGTCCGATTTGTTGGCACTCAAGACTGTTTTGCGTGGCAGATGGACTAGTCAATAACCCGGCGGTCAGTGCTCAATCTTCTAGTTTTGTGCCTGCCGACTCAAAGTTCTTCGTACTGTGTATAAATTGATGGTCGTGTCGCCGGTGCGGTGGTAACTACGTGGCCATTTTCTCTCGCATTACTTTATTTCAAGTAGGTTAGAAGCCTACACAATAAATAACTAATATTTATAACAATCTAGACTGTAATACATAGTCTACTACGGCAACAACCGGAGCAGTGCCCTTTACTCCTGCTTGGAAAGTAACGGTAACGGAATGGAAAGTACCTACCCAGAGTGAAAATCGGGGGCACCATCCTGGGTTCATCCTGTGGTCACCTGCACCCGGTGCCATTTCCCAGATGCAAGAATGATTGGACACAATATGGGATTGTTCTACTCCGCCAGGCTGTCTATCTCgggtcacacacacatcacatcacatctacGGAATGCCAGCTGTAGATAAAAACGTTGGCCTCTGCTGAAGACCGCATGAACCTGGTTGAAACATATGGGCAGGTTTGACAACAGACCAACAATTCAAAGTGACTTGAATGTTACGGTTCAATACATGCACCACCTCCCGACTAATTACTTGGTTCATCAACAATATCGCACACAGCATACGCCTGACCTGACCGAGTGTGTTACGACTGCCCACGTGAGGTGGTACACAGACACCATGCAGTGGAGGAGGCGCCACTGCTACACGCATGTCGCTggcctactgtctctcctctcgctcctgaTCATCCTGGGCCATCAAGACTGGCTGCCGGGCCTCAGGGGGCCAACATGGCAGAGGGAGCACCTAGTGGCTTACACCGAAAGAGGACTACACTCTACCAAAGAAAAAGGGAATCACAGCTCATCACAGAATCTATGGAGGGACGCACTGGTTCCCCCTTCGCCTCCGGAAAGAAATGCCAACCTCAGTTCCCCTCAGGACTTCTCCTTTCCACAGGGGATTACGGGACTGGAGAACTCAGTGGCGGCTAATGCTAGCTTGAGTGGGGAAGTCGGGCTAAGGGGCCTGCTGACCTCAGAGCCATACCCTTACATCATCAATGAGCCCGACAAGTGCCGGGAGGGCAACCCAGAGCCCTTCCTGGTGCTGCTGATAGCCACGGAGGCCAATCAGGTGGAAGCCAGGGAGACCATTCGGCAGACCTGGGGGAACGAGAGCATGGTCCCGGGCCTAAGCTTTGTTAGGCTCTTCCTGTTAGGCGTAAAGGAGGGCAGGGTGGGCCGCCTGCAGCAGAGCAGCCTGGAGGCCGAGAGCCGGAGGCACCGTGACATCATCCAGCAGGATTACATGGACacttacaacaacctgactataAAAACCCTGATGGGCATGCACTGGGTGTCCACGCACTGCCCGGGCACCAACTATGTCAtgaagacagacagtgacatgTTTGTCAACACAGAGTATCTCGTGCACAAGCTGCTCCAGCCAGAGATGCACCCCAAACGGGACTATATTACGGGCTACCTGATGAGGGGCTATGCACCCAACAGGAACAAGAATAGCAAGTGGTACATGCCCTCCGAGCTGTACCCCAGTGAGGTGTACCCTACTTTCTGCTCAGGAACGGGCTATGTGTTCTCAGGGGACCTGGCTGGAAAGATATACAGGGCCTCCCTGGGTATCCGCAGGCTGCATCTGGAGGACGTTTACGTGGGCATCTGCCTGGCCAAGCTGAGGATCGAACCCACGCCGCCGCCTAATGAGTTCCTGTTCAACCACTGGCGGGTGTCCTACTCCAGCTGCAAGTATAGCCACCTCATAACCTCCCACCAGTTTCACCCCAACGAACTGCTCAAGTACTGGCACCACCTGCAGAGCAACAAGCACAACGCCTGCATCAACACGTCCAAAGACAAGGTGGGCAGGTTTCAGAGGAAACTGCAGGGTGTACAGCCTATTTGGTGACAGAGGGTTGAGTGTGATGTTAGGTCATTGCCTGTGCAGGAGTCACTGGGCAAGAGATGAGTCAAGCATGTTTTTGGACAAACTAATGCTTGAAGACAAAAAAAAATTTAAACTACAGTTTATATTCAAGTTTAATACATTCATTGATTGAAATAATATATGCATTGGGGTACAGAGGAACACATCACTTATGTGAAATGTGGGTGCTGTTTATTATGAGGATATATCTTAAGACTATTGGTGGACTGTCACCGTCTAGTATCCATTTTGTTCAACTTGAGTTTAAATACTTTTCCTTTTAACCCCCTAAGGTTGAATCGAAGAACCATAATAAAAAAAGATCTGTAAGTTTcagctaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU817144 lncRNA downstream 75324 50955469 ~ 50957241 (-) True G719202
TU817048 lncRNA downstream 213578 50818782 ~ 50818987 (-) True G719114
TU816988 lncRNA downstream 294249 50737088 ~ 50738316 (-) False G719069
TU816985 lncRNA downstream 294623 50737372 ~ 50737942 (-) True G719069
TU816994 lncRNA downstream 295703 50736259 ~ 50736862 (-) False G719069
TU817200 lncRNA upstream 14113 51081733 ~ 51082025 (-) True G719250
TU817202 lncRNA upstream 16623 51084243 ~ 51084510 (-) True G719252
TU817203 lncRNA upstream 16894 51084514 ~ 51084723 (-) True G719253
TU817205 lncRNA upstream 27756 51095376 ~ 51095650 (-) True G719255
TU817213 lncRNA upstream 38027 51105647 ~ 51105861 (-) True G719262
XM_021612804.2 mRNA downstream 183760 50834540 ~ 50848805 (-) True LOC110530036
XM_021612802.2 mRNA downstream 238971 50791220 ~ 50793594 (-) True LOC110530035
XM_021612801.2 mRNA downstream 264654 50740976 ~ 50767911 (-) True LOC110530034
XR_002474474.2 mRNA downstream 302631 50716128 ~ 50729934 (-) False LOC110530033
XM_036985594.1 mRNA downstream 302635 50716128 ~ 50729930 (-) False LOC110530033
XM_021612813.2 mRNA upstream 59994 51127614 ~ 51189612 (-) False LOC110530042
XM_021612816.2 mRNA upstream 184735 51252355 ~ 51259056 (-) False LOC110530043
XM_021612817.2 mRNA upstream 184735 51252355 ~ 51259060 (-) False LOC110530043
XM_021612815.2 mRNA upstream 186545 51254165 ~ 51259061 (-) False LOC110530043
XM_036985600.1 mRNA upstream 248674 51316294 ~ 51323226 (-) False LOC110530045
TU817090 other downstream 93094 50936928 ~ 50939471 (-) True G719151
TU816422 other downstream 1143313 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 1194869 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 2243603 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 2250050 48782121 ~ 48782515 (-) True G716480
TU817704 other upstream 184735 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 1693419 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 2395562 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 2430528 53498148 ~ 53499730 (-) True G722459
TU820950 other upstream 2735823 53803443 ~ 53856065 (-) True G722602

Expression Profile