RNA id: TU817159


Basic Information

Item Value
RNA id TU817159
length 3361
lncRNA type read_through
GC content 0.44
exon number 2
gene id LOC110530040
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 51032565 ~ 51067801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAAGTTCTTCGTACTGTGTATAAATTGATGGTCGTGTCGCCGGTGCGGTGGTAACTACGTGGCCATTTTCTCTCGCATTACTTTATTTCAAGTAGGTTAGAAGCCTACACAATAAATAACTAATATTTATAACAATCTAGACTGTAATACATAGTCTACTACGGCAACAACCGGAGCAGTGCCCTTTACTCCTGCTTGGAAAGTAACGGTAACGGAATGGAAAGTACCTACCCAGAGTGAAAATCGGGGGCACCATCCTGGGTTCATCCTGTGGTCACCTGCACCCGGTGCCATTTCCCAGATGCAAGAATGATTGGACACAATATGGGATTGTTCTACTCCGCCAGGCTGTCTATCTCgggtcacacacacatcacatcacatctacGGAATGCCAGCTGTAGGTAAATTGTCAGCTCAAGCCCCAGAGGCCCAACTCAGTCCCACAgatggggggggcgggggggaaaAAGATGCTTTTTGATCAATAATACTTGACATTTTTTGGAAAGCTCAAATTACCCCCTTGATGGTTATGATGGGGAGAAAATCAGAGCTGTAAATGGTTTAACCTGTAACCAAGGCTTTATAGCCAATATGGTTAATTATGGCTGGCATTGGTCACAATCTGCCACAATACCAATGTTGCCAGCCAAGGTATACTAGGAGATAGTAGGCCTAGTTGGACAAGGCTATCTGAATGTGTACAATGGAAGTTAGAGGTAGACTAAACATTCATTATTTAATAGAACAAAAAGCACTAACTACCTGACTAAAATGGCTGTGACTAAAACTAGACTAGAATTGTCCAGAGTTTGTCGACTGATAACTAAAACTAAAAGGatgaaatgactaaaatgtgactTAAGACTAAAATGGTGTTAAGACTAAAAActaaacaacaaaaaaagctgCAAAAATTAACACTGCTTTAAAAGctcgagtggcacagtggtctaaggcactgcatctcagtgctataggcgtcactacagaccctggtttgattccaggctgtatcacaaccgactgtgattgggagtcccatagggtggcgcacaattggcccagcgtcgtccgggttagggtttggctggggtaggcccatcattgtaaataagaattggatcttaactgactagcctagtcaaattaaaaatatatatatattttttaaagtggaGTTTCAGTGTTCATTTCTCCAGGCCAGCATTTGTGATGTCTGCTAGTTCATCAAACCAGGCTCATCTATTAATCTACACAAGCAGAGTAGTGGAAATGTGTAACATTCTGCCTGTCAGGCTATCTGTTACGAAATCCCTGCTGGAGACCCTTAGCACACCATCTCATTACCTCCGTTTCTTTTGTTTCAGAAACACTACCTTTCCATGTACATTTAATCCGTGTGTGTGTCAAAGTACCCTTGCCTGTGTAACTGAGGTTGCCTTATTCACCTCTAACTGGGGGAGGTGCTAGTGGGTCACAGATCAGCCCAAACGGAGATTCGCTCTTTCACGATCGCtcacatgctgaaacaggaaagggtcttccacaaactgttgccacaaagttggaagcacagaatcgtttgGAATGCCATAGTATGCTGTAGCGTTCAGattccccttcactggaactatggggcctagcccaaagcatgaaaaacagccccagaccattattccttctccactaaactttacagttggtagtATACATTGGGACAGGTACCGTTCTCCCGGCATCCTCAAaacacagatttgtccgtcggactgccagatggtgaagcgtgattcatcactccaaaagaacgcgtttccactgctccagggtcAAATGGTGGCGAGCATGACACCACTCTAGCCGACagttggcattgcgcatggtgatctaaggcttgtgtgtggctgcttggccatagcaacccatttcatgaagctcctgacaaacagttattgtaatgaagttgcttccagaggcagtgttgcaaccaaggacataATTTTTGCGTActgcgcgcttcagcactcgccggtccagttctgtgagcttgtgtggcctaccacgtcGCGGCTGagcagttattgtgaagtggaaacgtctacaAGCAACAGCACTTAGTTGTCCAGGGCAGcgctagcagggcagaaatttgacgaactgatatgtggaaaggtggcatcctatgacggtgccacgttgaaagtcactgagctcttcagtaaggccattctactgccaaagtgtgtctatggagattgcagactgtgtgctcgattttaaacaCTTGCCAGCAACGAATCCacgaatttgaaggggtgtccacatacttttgtatatttagtgcatgtcacacaaaaacacacccctaaacacacacacacagagagaatgtgACTTCTCTACACAGCCATAGAGATGCCGAATAACAGAAGGGGATAGCAAAACAGACATGTGATTCATCACGCTGCACAAAGACCGGGGAAGGAGTGACCTTCAGCTCTGGACCTCATGTTCTTTTCATTTCCACGATAACTGCCATGTGTGGGAACAATGACGGACGCTTGATGGCAGCTGCTAAACACTTGTCTGACCGCGTTCCGTGTAGGATGCCGATCACAGAATTGACAGGACGTTTATAACGTTGACGTTTGGCAGCTCTCCTTTCATGAACAATTCCATATACGCATCTAGATCCATAGCCTCCGATACGTTTTAGTGTGATTTGATTTGGGGAACGAATTCATGTGATTTGGTTTATTACTATCTGCTGCTGATGGGATGACTTCTCAAAgtagagtgtgtatgtgtgtgtaggcatTAGGGGTGGGGgcaatttatacttttactcccCCCACTTATCTGAAACCGCCATCACCCACTGATTAACTTGTCATTTTTGCAGATCAAATGTTGTTGAGCTACTACTGTCAATATTCATCTTTAGAAATTAGCATGGCATTTAGCCAATGCATATATTTGAGCTTCGAATTATTGCAGTCaaaacagggtgagagagagtgcaCCTCAAGGCTTAAAGAGATTCatagacagaactctgcaggggagtgaAAGAGATAAGAAACAAGAGACATACCACTATAAAGCAACTTGGGGAGTGGAAGCTTACTGCTGAGCCCTTAGAAAACACTGGAACTATATTTCGCTCCTGCAAGTTTGTATAACTGTAtatgcatgggcttggtctcATGAGTAGGTGTTGATGTAGGCAGTTACATCACTATGGGCAAGCATAATAAAAGCAACTTGGACTTTTCCTATTTTGCAGAACTCGGGAGAGACATCTTTGACTTCTGTCTACAGCTGTATTGATTAAAACTGATATGATTTACAAGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU817144 lncRNA downstream 98155 50955469 ~ 50957241 (-) True G719202
TU817048 lncRNA downstream 236409 50818782 ~ 50818987 (-) True G719114
TU816988 lncRNA downstream 317080 50737088 ~ 50738316 (-) False G719069
TU816985 lncRNA downstream 317454 50737372 ~ 50737942 (-) True G719069
TU816994 lncRNA downstream 318534 50736259 ~ 50736862 (-) False G719069
TU817200 lncRNA upstream 14347 51081733 ~ 51082025 (-) True G719250
TU817202 lncRNA upstream 16857 51084243 ~ 51084510 (-) True G719252
TU817203 lncRNA upstream 17128 51084514 ~ 51084723 (-) True G719253
TU817205 lncRNA upstream 27990 51095376 ~ 51095650 (-) True G719255
TU817213 lncRNA upstream 38261 51105647 ~ 51105861 (-) True G719262
XM_021612807.2 mRNA downstream 17317 51032565 ~ 51038079 (-) False LOC110530040
XM_021612811.2 mRNA downstream 17317 51032565 ~ 51038079 (-) False LOC110530040
XM_021612804.2 mRNA downstream 206591 50834540 ~ 50848805 (-) True LOC110530036
XM_021612802.2 mRNA downstream 261802 50791220 ~ 50793594 (-) True LOC110530035
XM_021612801.2 mRNA downstream 287485 50740976 ~ 50767911 (-) True LOC110530034
XM_021612813.2 mRNA upstream 60228 51127614 ~ 51189612 (-) False LOC110530042
XM_021612816.2 mRNA upstream 184969 51252355 ~ 51259056 (-) False LOC110530043
XM_021612817.2 mRNA upstream 184969 51252355 ~ 51259060 (-) False LOC110530043
XM_021612815.2 mRNA upstream 186779 51254165 ~ 51259061 (-) False LOC110530043
XM_036985600.1 mRNA upstream 248908 51316294 ~ 51323226 (-) False LOC110530045
TU817090 other downstream 115925 50936928 ~ 50939471 (-) True G719151
TU816422 other downstream 1166144 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 1217700 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 2266434 48788521 ~ 48788962 (-) True G716488
TU814220 other downstream 2272881 48782121 ~ 48782515 (-) True G716480
TU817704 other upstream 184969 51252355 ~ 51259019 (-) True LOC110530043
TU819491 other upstream 1693653 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 2395796 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 2430762 53498148 ~ 53499730 (-) True G722459
TU820950 other upstream 2736057 53803443 ~ 53856065 (-) True G722602

Expression Profile