RNA id: XM_036985600.1


Basic Information

Item Value
RNA id XM_036985600.1
length 2904
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC110530045
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 51316294 ~ 51323600 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaatatatgtatatacattcCACTGTCTATTTCAAAGTCTGAAAGCTCTTACTACTCTGGCAACTTTGTTAGCTAGCTGCGTTCATTCAATGCGACcaagccagctaacgttagctacagtaACGTTAACTAGTTAATATTTTGTAGGTCTTATGAGTTGAACATTAAGCTATATGTATATATTAGGCCCATCCAAACGTCAGTATGATATCATTCGTCTGAACAAGAAAGAGCAACAATCACGGAGGCCAGGCCCGGGGAACCGCAGGCCATTACAGAAAGGAAAGGGCTTTGTACAAGGGAAACCAGTTGGAGCGAGAGCTGGAGGACAGACCCAAAGAGGAGGTGGTGTAGCAAGAAGGGGGGTAACGAGAGTGGGTGTTGGAAGAGGCCGGAAGATTCCCCCTCTGGTTGGTCAAAGCCGAGGTCAAGGGGTTATCACTGGACTGGCGGCCCGGAAGACGGCAGCCGTACAGAAAGGAATCAGTCCACTCAACCGACCGACTGTCAACCAGAAGTCACGGCCCTTCAACAACCAACCGCGGCCCTTCAACAACCAACCGCGGCCCTTCAACAACCAACCGCGGCCCTTCAACAACCAATCGTGGCCTTTTATCCAATCAGCCCAATTCAGACAGACGCAAGGCCAGAGGAGgccgtacagacagacagacgtacagaGAGGCCCCAACACGATGACACATACAAGACCCGTTCAGCTGCGGGGACGGCCTCTGCCCCCTGTCCATCAAACCCAGAGAGAAGCTCGCCAGGCCACGTTTCTCTTCCACAGGGGCCTCAAGGTTCACGCCCAGGTGCAGAAGCCAGCTCCAACATCTCTACCCCCTATTCCAGTTAGATCTCGCCAGTGGCGCACGTCAACAAACAGCAGTGGGATCCTGACCGTTTCCATCGACAACCCAACTGCCACCATGACGCAGCCTGAGCCTCCCAGTGCTTGGTCCCTGCACCCCTCGGCACCCATCAGCCCGTCCCCAGtcaaggtggaggaggagaagaaaccaGTACCACCTAAAGGAGTCCCCCTGCAGTTTGACATCAATAGCGTGGGGAAACAGCAGACGGCGCTGACTTTGAATGAGCGATTCCGCATCCTGAAAGACCAGCGCATCGCCACTGCGCAGACCAGCAAAGGCAGCCGATTCGTCACCGTGGGTTAATCCAACGATACGAAGGAAATCTTTGTGTTCCACTCAGACAGACACGCACTCTGACCCACACTTATCTAATTTGCTGGAACCATTCAAAAGGTCCCTGCACTGATCTTAAGCTGATTCTCCTGAGTGACTTTCCTCATGGAGCAGCAGAATGAGATAGACAAAGTGCACTACTCCTCAAATGTGAGAACTATATACGGGTGCAGTTATtgtggaatatatatttttttgtaccatgaTAGGACACTATCATTATTCATAACAatgtatattgaacaaaaatataaacgcaacaatttcaaagattttactgagttacagttcatataagaaaatcggtcaatttaaataagtaaattaggccctaatatattgatttcacatgactgggcaggggtgcagtctggggagccaggcccaaccaatcagaatgaagtttttccccacaaaatggctttattacagacaaatacTCCTCAGCTTcaccagctgtccgggtggctggtcttggacaatcccgcaggtgaagaagccagatgtggaggtcctgagctggctTGGTTACACGTTGTAAGGTCGATTGGAGgtcctgccaaattctctaaaactacgttggaggcggcttatggtagcgAAATTAACATTatgttctctggcaacagctctggatgACACTCAACCTGAGACATCTTTTGGCGTGTTCTGTGACTGcaatttttatttcattttttattgtccccagcacaaggtgcacctttgtaattatcatgctgtttaatcagattcttgatatgtcacacctgtcaggaggatggattatcttggcaaaggagaaatgctcactaacatggatgtaaacaaatttgtacacaaaaTTTGAGAAATATTTTgtgaatatggaacatttctgggatcttatttcagctcatgaaacgtgaCCAatgctttacatgttgcgtttgtatttttgttcagtgtacttagCTGTTGTCTTCAGGAGCTTCAACATTTGTCTGGACGTAAACGAAAATCCCTTTTCTCGCAAGGAGTGCAGCTGTGGGAGTTGTACTGAAGGACATTGGAAGAATGTTTTTCAATACGGATGTTGCTTTGTGCCAGAAGGAAAGGGTTTTGTTTAGTGTCTTTTATTAAATTCTTTTTTTATTGATGGCATTTTTTTAAATACTATTTGTTTTGTTTCAAATAAAGAAATGTGGGACTTTGTTTCCCTCTCTAGCTAGATTTCCATCGAATTCACGACTGATTTTTCATGCTAATATTCTAAAATCTACATAAAGAAAATACACATTTTCCCACCTGTGGAGTTTTTCCACCAAACAGACTTGTTTCAGATAAAAATCAGGGGTGTGTGATGACGAAGTGTAGACAATTTACTtttaagttttcatgtaccgaataaaaatctgAAGTTCATtgtttccatctcattttcaactctactgatagtTTTGACACACTTACTTGCATATACTACATTTCCAGCCACAGTTTTTATGTTGAAAAATAAAGTGCTAAAGTATTTTTGCCCAATACAATCCTTAACCACAGTTCACTTCACCTTTAACACCCATCACAGGTATGAAATAATGGAATTTATGTAACATAACtggtaaaaatgtatttattttggttCTGATAAATGTGGGCTGCTGTCCTATAGGAAATGCTGTTCGGTGTATCTGTGGCATATTTTTTTTGCTACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU817756 lncRNA downstream 2757 51313308 ~ 51313537 (-) True G719762
TU817748 lncRNA downstream 3620 51311889 ~ 51312674 (-) False G719761
TU817752 lncRNA downstream 3692 51311889 ~ 51312602 (-) True G719761
TU817686 lncRNA downstream 87623 51228401 ~ 51228671 (-) True G719702
TU817685 lncRNA downstream 87992 51228088 ~ 51228302 (-) True G719701
TU817763 lncRNA upstream 4980 51328206 ~ 51328432 (-) True G719767
TU817790 lncRNA upstream 55993 51379219 ~ 51380062 (-) True LOC110530046
TU817833 lncRNA upstream 115728 51438954 ~ 51439395 (-) True G719835
TU817839 lncRNA upstream 121994 51445220 ~ 51445520 (-) True G719841
TU817840 lncRNA upstream 123513 51446739 ~ 51446984 (-) True G719842
XM_021612815.2 mRNA downstream 57233 51254165 ~ 51259061 (-) False LOC110530043
XM_021612817.2 mRNA downstream 57234 51252355 ~ 51259060 (-) False LOC110530043
XM_021612816.2 mRNA downstream 57238 51252355 ~ 51259056 (-) False LOC110530043
XM_021612813.2 mRNA downstream 126682 51127614 ~ 51189612 (-) False LOC110530042
XM_036985599.1 mRNA downstream 248493 51032565 ~ 51067801 (-) False LOC110530040
XM_021612824.2 mRNA upstream 54678 51377904 ~ 51380863 (-) False LOC110530046
XM_021612828.2 mRNA upstream 172854 51496080 ~ 51516909 (-) True mfsd8l2
XM_021612831.2 mRNA upstream 202041 51525267 ~ 51546934 (-) True LOC110530051
XM_021612832.2 mRNA upstream 237574 51560800 ~ 51582355 (-) True LOC110530052
XM_021612833.2 mRNA upstream 260299 51583525 ~ 51591883 (-) False LOC110530053
TU817704 other downstream 57275 51252355 ~ 51259019 (-) True LOC110530043
TU817090 other downstream 376823 50936928 ~ 50939471 (-) True G719151
TU816422 other downstream 1427042 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 1478598 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 2527332 48788521 ~ 48788962 (-) True G716488
TU819491 other upstream 1437813 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 2139956 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 2174922 53498148 ~ 53499730 (-) True G722459
TU820950 other upstream 2480217 53803443 ~ 53856065 (-) True G722602
TU821019 other upstream 2603002 53926228 ~ 53927959 (-) True G722670

Expression Profile