RNA id: XM_021612824.2


Basic Information

Item Value
RNA id XM_021612824.2
length 2377
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC110530046
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 51377904 ~ 51380863 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCTCAGTATAACTGTTCCTCTCTGGGTCTACCTGCCACCACTCCTGACCAGCTGGGTTGGAATTTGTCCTGGGCCCTGGGCAACATCAGTGCTGATGACATGGAGGACATGTGCCTGAGTCGGAGTCAGTACCTGGAGAAGTTTCTAGGCTTCCGGCGGTCACCCATGTTCCTGCCTGTCTGCATTACCTTCCTCATCATCTTCATTGTGGGATTGTTTGGGAACATGCTCACCTGCAGCGTCATCGTGCGCAACAAGGTGATGCGGACGCCAACCAACTACTACCTGTTCAGTCTGGCCGTGTCCGACTTATTGGTCCTAGTCCTGGGTATGCCATTGGAACTCTATGAGATGTGGAGCAACTACCCATTCCTGTTCGGTTCTGGCGGCTGCTACTTCAAGACCTTCCTGTTCGAGACTGTCTGCTTTGCGTCCATCCTCATTATAACAGTGCTGAGCGTGGAGCGATACATCGCCGTGATACACCCGCTCAAGGTCAAGCACGTCGCCACTCGTGCCCACGCCAAGCACGTCATCCTGATGCTGTGGGCCATGTCCATGGCGTGCGCCGTGCCCAACACCAGCCTCCATGGGGTGGCCGTGCTAGGAACCCGGTTCGGGCGCCAATTCCCAGAGTCGACCATTTGCATGATGGTGAAGCCCCGGTGGATATACAACCTGATTATCCAGGTGACCACGCTGGTCTTCTTCCTGCTGCCCATGCTCATCATCACCGGGCTGTACCTTCGCATTGGCCTGCAGTTGAGGATGGAGAGGGGCATGCAGGGGCTGGGGACCGGGCCGAGTTTTGGTTCTGACAGACACTGGAGTGTCCACAGGCAGCAGCAGACGGCACGCCACCGACAGGTCACCAAAATGCTATGCGTACTGGTGATCGTCTTCGGCATCTGCTGGGCTCCCTTCCACATTGACCGCCTCATGTGGAGCTTCATAAACTCCTGGACTGGCCACCACCACCTGGTCTTTGAGTACGTCCACATAGTCTCCGGGGTCTTCTTCTACCTCAGCTCGGTGGTCAACCCCATCCTCTACAGCCTCATGTCCACCCGCTTCCGGGAGATGTTCCGGCAGGTCACGTGTCGCTACGGCCCATGTGGGGGTCACGTGCGCAGGCTGACCTCCGGCTGCACCCAACTGACCCTGCGTAGTACTGCCGCAACACAATGGGACCCCAGAGAGGATCACCCCAGACAGAGAGGAGCGCCACGTGTACGTAGACTCCAACCACCAGCCTGTATATGCCAACACAAGCCCGGATTAGATATGGGTGAGGGGGTGGGGGTACCAAAACGAGGCTCAAAAAAAGAACCAGGATTTGGTACCAAAATGACCGTATTTGTGACTGAATGAACGTGTACGGTGAAAGTTTGGATGGAGCGAAAGCAACTGCGTTGACGTTTTGGCCTCGACTTTGGTGTAGAATTCTCACCGGGGATACCAACATGAAACAAGATTAATAACAAATGTATCACTGATTGAATGTGTACAGTGAGAGTGGCTAGAGCGAAAGTTGTCCTTGTTCTTCGTTCGGATATTAATATTCCGGTGGAACACATCATTCATAAAGCTTATCTAATAATTGAACTGTGAAAAAGAAACAGTACCCAGCTTTGTAAATTCGCTTATTGATGTGTAATCCGTGAAGCTTGAATATCTTATTCTGTTCAAATGTTTCAGGAGGCACAATTATAGGTTGTAGCGGTCTTCTTAACTGTCTTCTTCAATGTGTTGTTGTACCGTTTCGGTGTACTAGCTATACCATCAAAATCCCACTCACTATGAATGTATAGCACAGACAATATGGAAGTACAGTACATGGGAGATGGAAAAGACGAAAATGTGACATGCGATTTACGCATAACATCCTTAAAGAAATGGAAAAAGGGGGGGAATTTCCATCGACAGTAAGTGAACACATGTGCTAAACACATGCTATGTGCCTTTGTAGTACTACTCCAAAATGTATAGTATTTAGCTTCAAGTGCTTTCTGGAAACTGCCATCTTTTGTTCCTGTGTAAACTGATTTAGAATTCAACATTTTTACAACGACAACAGTTTCCAGCATCACCTACATTTTCATTGCTAAACAACATGTATCATATTTAGGAATTATTTGCATGCTCCCATTGAGTCTCAAATGTTTTGGAATGGTCTTCAGTATAAAGAGACATGGTTGAGATACCTGTCATGTTGTCATGTGGTTTTAGTAAGGGCTTGATTGTTTACAGAATAATAATTACATTGCTTTTAAGAAGCCTATTGTAAAGCATGCACATTAAACAGTGCTTTAGGTGTCACTACAggcaccctggttcgaatccaggctgtatcacaaccggctgtgattgggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU817763 lncRNA downstream 49472 51328206 ~ 51328432 (-) True G719767
TU817756 lncRNA downstream 64367 51313308 ~ 51313537 (-) True G719762
TU817748 lncRNA downstream 65230 51311889 ~ 51312674 (-) False G719761
TU817752 lncRNA downstream 65302 51311889 ~ 51312602 (-) True G719761
TU817686 lncRNA downstream 149233 51228401 ~ 51228671 (-) True G719702
TU817833 lncRNA upstream 58091 51438954 ~ 51439395 (-) True G719835
TU817839 lncRNA upstream 64357 51445220 ~ 51445520 (-) True G719841
TU817840 lncRNA upstream 65876 51446739 ~ 51446984 (-) True G719842
TU817852 lncRNA upstream 85113 51465976 ~ 51466228 (-) True G719854
TU817888 lncRNA upstream 130424 51511287 ~ 51575248 (-) True G719886
XM_021612822.2 mRNA downstream 54304 51316294 ~ 51323600 (-) False LOC110530045
XM_021612823.2 mRNA downstream 54304 51317992 ~ 51323600 (-) False LOC110530045
XM_036985601.1 mRNA downstream 54304 51317992 ~ 51323600 (-) True LOC110530045
XM_021612821.2 mRNA downstream 54305 51316294 ~ 51323599 (-) False LOC110530045
XM_036985600.1 mRNA downstream 54678 51316294 ~ 51323226 (-) False LOC110530045
XM_021612828.2 mRNA upstream 115217 51496080 ~ 51516909 (-) True mfsd8l2
XM_021612831.2 mRNA upstream 144404 51525267 ~ 51546934 (-) True LOC110530051
XM_021612832.2 mRNA upstream 179937 51560800 ~ 51582355 (-) True LOC110530052
XM_021612833.2 mRNA upstream 202662 51583525 ~ 51591883 (-) False LOC110530053
XM_021612841.2 mRNA upstream 267675 51648538 ~ 51689345 (-) True si:dkey-18p12.4
TU817704 other downstream 118885 51252355 ~ 51259019 (-) True LOC110530043
TU817090 other downstream 438433 50936928 ~ 50939471 (-) True G719151
TU816422 other downstream 1488652 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 1540208 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 2588942 48788521 ~ 48788962 (-) True G716488
TU819491 other upstream 1380176 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 2082319 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 2117285 53498148 ~ 53499730 (-) True G722459
TU820950 other upstream 2422580 53803443 ~ 53856065 (-) True G722602
TU821019 other upstream 2545365 53926228 ~ 53927959 (-) True G722670

Expression Profile