RNA id: trnav-aac-80


Basic Information

Item Value
RNA id trnav-aac-80
length 73
RNA type mRNA
GC content 0.56
exon number 1
gene id trnav-aac-80
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 52586514 ~ 52586586 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttccgtagtgtagtggttatcacgttcgcctaacacgcgaaaggtccccggttcgagaccgggcggaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU819457 lncRNA downstream 40780 52540080 ~ 52545734 (-) True G721248
TU819441 lncRNA downstream 48175 52485609 ~ 52538339 (-) True G721237
TU819437 lncRNA downstream 96111 52483522 ~ 52490403 (-) True G721235
TU819408 lncRNA downstream 126855 52448814 ~ 52459659 (-) True G721207
TU819406 lncRNA downstream 129656 52448383 ~ 52456858 (-) False G721207
TU819443 lncRNA upstream 2633 52589219 ~ 52656589 (-) True G721238
TU819473 lncRNA upstream 132700 52719286 ~ 52726784 (-) False G721260
TU819474 lncRNA upstream 134201 52720787 ~ 52726784 (-) False G721260
TU819472 lncRNA upstream 138362 52724948 ~ 52726784 (-) True G721260
TU819504 lncRNA upstream 191792 52778378 ~ 52778596 (-) True G721288
trnav-aac-79 mRNA downstream 1210 52585232 ~ 52585304 (-) True trnav-aac-79
trnav-uac-13 mRNA downstream 1412 52585030 ~ 52585102 (-) True trnav-uac-13
trnav-aac-78 mRNA downstream 2492 52583950 ~ 52584022 (-) True trnav-aac-78
trnav-uac-12 mRNA downstream 2694 52583748 ~ 52583820 (-) True trnav-uac-12
trnav-aac-77 mRNA downstream 3774 52582668 ~ 52582740 (-) True trnav-aac-77
trnav-aac-81 mRNA upstream 1435 52588021 ~ 52588093 (-) True trnav-aac-81
trnav-aac-82 mRNA upstream 2943 52589529 ~ 52589601 (-) True trnav-aac-82
trnav-aac-83 mRNA upstream 4107 52590693 ~ 52590765 (-) True trnav-aac-83
trnav-cac-30 mRNA upstream 5078 52591664 ~ 52591736 (-) True trnav-cac-30
trnav-aac-84 mRNA upstream 5280 52591866 ~ 52591938 (-) True trnav-aac-84
TU817704 other downstream 1327495 51252355 ~ 51259019 (-) True LOC110530043
TU817090 other downstream 1647043 50936928 ~ 50939471 (-) True G719151
TU816422 other downstream 2697262 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 2748818 49785674 ~ 49837696 (-) True G718489
TU814229 other downstream 3797552 48788521 ~ 48788962 (-) True G716488
TU819491 other upstream 174453 52761039 ~ 52761451 (-) True G721275
TU820029 other upstream 876596 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 911562 53498148 ~ 53499730 (-) True G722459
TU820950 other upstream 1216857 53803443 ~ 53856065 (-) True G722602
TU821019 other upstream 1339642 53926228 ~ 53927959 (-) True G722670