RNA id: TU820773


Basic Information

Item Value
RNA id TU820773
length 4311
lncRNA type read_through
GC content 0.40
exon number 2
gene id LOC118965526
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53527596 ~ 53533919 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCAGATCTGTCTGGAATATCAGCTGGTAAGTAGCAGGGACAGTGGAAATGGCGAACATGGAAAACATTTATCTGAGCTCTGGCTCCTCACAGATCAGCCTTAGATCTGCAGTGGAAGGAATACTTTCTCTCATTAAATAAATCACTGGTCAAAAGTCCTCGGTCTTCcatgaaggcactgtagttgggatgcatgcatgcacgcgcacacacttaACTCAGTCACACCAACTCACTATTTTGGGTCGAACTTGCCTCATGCAGCTCATTGTAACTCACAAACTAAATTGATTACGTTAATTTTTTTCTCATTgatatacacacactaccccataatgacagtgaaaataggtttttagacatttttgaaattgTATTGAAAGTTAAATACAGAAGTGTTTACACCCCTGAGTTAATCATTTGTAGGAGCACATTTGGTACCGATTACAGCTGTGGGTCTTTCTGGGTGAgttctaagagctttccacaactggattgtgcaacatttacccATGTATTGTTTTCAAAATTCAAGCTCTgtcattggttgttgatcattgctaggcaaccattttcaggtcttgctatagattttcaagtagattcaaGTCCAAACTGAATCTCTACCACTCCaggacattcactgtcttcttggtaagcaacgccaatgtagatttggcctttttttttttaagttattgtcctgctgaaaggtgaattcatctcctagtgtctggtggaaagcagactgaaccaggttttcctctaggattttgcttgtgtTTAGcaccattccgtttcttttttatcctgaaaaactccccactatgcttgaaaatatggagtgtagtactcagtaatgtgttgtattggatttgcattcagatttgtattcaggacaaaaagttaattgctttggctgacaggatgcatgttttggaatttaaaaaaaaacgtaattCCACTTTCATTGTAAAtcagattttgttcttaactgactttcctagataaaaaatatttaaacattgtgatgtacagttgaagttggaagttaggttgggttggagtcattaaacctaACTGGGTTGGAGTCATCTGGGTTGGAGTCATCCAACCTAacctacacttaggttggagtcattaaaacttgtttttcaaccactccacaaatttcttgtttgcaaactatagttttggaaagttggttaggacatctactttgtgcacgccacaagtaatttttactacaattgtttacagacagattatttcaatataatccactgtatcacaattccagtgggttagaagtttacatacactaagttaaacagcttggaaaattccagaaaattatgtcatggctttagaagcttctgactcaaatgatgtcaattagcctattggaggtgtacctgtggatgtatttcaaggcctaccttcgacctcagtgcctctttgcttgacatcatgggaaaataaattgtagacctacacaagtttggatcatccttgggagcaatttccaaaggcctaaaggtaccacgttcatctgtacaagcaatagtacgcaagtataaccaccatgggaccacgcagccgtcataccgctcaggaatgagacgtgttctgtctcctagagatgaatcccagaacaacagcaaatgaccttgtgaagatgctggaggaaacgggtacaaaagtttctatatccacagtaaaaacgagtcctatattgacataacctgaaaggctgctccaaaaccggcataaactcacactacggtttgcaactgcacatggggacaaagatcgcactttttgaagaaatgtcctctggtctgatgaaatacaaatagaactgtttggccataatgaccatcgttatgtttggaggaaaaagggggaggcttgcaagccaaagaacaccatcccaaccgtgaagcacggaggtgacagcatcatgttgtggggttgctttgctgcaggagggactggtgcacttcacaaaatagatggcatcatgagggagaaaaattatgtggatatattgaagtaacatctcaagacatcagtcaggaagttaaagcttggtcacatgggtcttccaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatgttttaaggacaacaaagtcaaggtattggcgtggccatcacaaagccctgacctcaatcctatagaacatttgtggtcagaactgaaaagtgtttgcgagcaaggaggcctaccagcctgactcagttacaccagctctgtcaggaggaatgggcaaaaattcacccaatttattgtggaaggctacccgacacgtttgacccaagttaaacgttttaaaggcaatgttaccaactactaattgagtgtatgtaaacttctcacccactgggaatgtgatttaaagaaataaaagttgaaataaatcattcactactattctgacatttcacattcttaaaatcagtggtgatgctaactgaccctaaaaatgtcaggaattgtaaaaactgagtaagtgtatttggctaaggtgtatgtaaacctccgacttcaactgtatgtactgcCACTGAGCACAAAGAGAGGCATTACAGTAGTTAAAGGGACCTGTTATGGCTGCGATCCCCGTACAGGGACCAACATCAGTGGAAATTtcagtgacaactaaaaatacaatTTCGTATTTTTAGTTtgaaacattcttgaaaatgcaagtgtcttacacccttcaaaagattagaatcttggtaatcaaactacgttttccaatttaaaatagctattacagagaacaaatcccatgcttttgtttgagaagagcaatcaagaacagaaacattttccgccatgacagtttctagacattcacatctgaaggtaaaattatgacttacattctgatatcttgctcttatttctcttcctgagtATCCCAttgatcaaatgaagtgccgttttctttgataaaatcaatttttatagcctaaatctaaacattttgtaaactatttgtgccgtgaattccatctctatcaaTTTTTTACGGAGCTTTCGGCGTGTTTCGCCCCTGTAAACAATCGTTTATATAGTCATGGTGggtttcagtgcattcctctggatgtttgcaacacagtCAAAGGTCATTGTTTTTTTTGCGGGGAGAATTGACCGAAGTGAACTGATTTTGAAGACAGCGATTAAATGACTACCTGACGCACCAATAATTTTAGCGAAGCTTCATTGATTGActatttctgcccaatgaccactgatcttcttgaaatctagctgggtagatagccaatgagctgaggtaaacgccagtatgtAATGGTTTGGGGTTGGACCACAATTCCTTGGTTGTAATCGCACGCGCAGGGAACTCCATTTTTGCCTTGACGATCAGAGCAGTTGCTGTAAGGCTTTTTACGTGCAGCTGTATTTTGGAAAGTTGTAgtttcaacgatttcattgaagataTCCTGGCGAATACATCATGAATACAAAGTGAAGTCAAActctaaagtaaaagtgaaagtgagacagattttgTTTTTTGAGGAATCTTGGAGTGTTATGATTCAAACGAACtgaggagctgtttctgcaaggacCGGACGTACTTCTGGATggtgatagcgactccgactgggaggccccggtgccaagctgcccACTCTACCTGTGCCCCCCAatggtgttcatatgccacagttcattactgcaggcatgactgcctcagggccaaaagggcacagcatggaggcgtcgttgtgttctgtgtcgcatgaaatgcaccacttgttcagtttgcctctgctttacatcagaaagagactgctatgggacagGGCACAGGCAGCAAAATACTGTGACGAGGATTTCCAAGGGGTGtactgtttatttttttgtttattcatttattttttttctatatttatttttgtaaacatttttgttgttgtgtgtgtgtgcgtgtgtgtgttagaattgctttttgatgtgttgtatatagttatttgcactgctgtatatagttataggtcatttcaccaattcggccacttgggtacatttgggcaacttgtgtgggacacctgagtgacttcatgctaaatgtcatgtagctcacccattcctgaagttatcaatctgaaactttgcacacctacagttgccctcctgtgttatccatcaaaattatatccagcatcctatctgactgtgtggcgATTCTAGTACATTTGAAAGATGatactacaacaataaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU820770 lncRNA downstream 30169 53495804 ~ 53497427 (-) False G722459
TU820062 lncRNA downstream 46471 53480893 ~ 53481125 (-) True G721825
TU820041 lncRNA downstream 50113 53463800 ~ 53477483 (-) True LOC110529122
TU820028 lncRNA downstream 64744 53462423 ~ 53462852 (-) False LOC110529122
TU820019 lncRNA downstream 69570 53457822 ~ 53458026 (-) True G721782
TU820801 lncRNA upstream 61637 53595556 ~ 53595773 (-) True G722488
TU820815 lncRNA upstream 101930 53635849 ~ 53709367 (-) True LOC110530114
TU820840 lncRNA upstream 144006 53677925 ~ 53679995 (-) True G722523
TU820885 lncRNA upstream 291105 53825024 ~ 53828481 (-) True LOC110530934
TU820960 lncRNA upstream 294760 53828679 ~ 53829059 (-) True G722612
XM_021611263.2 mRNA downstream 48683 53462034 ~ 53478913 (-) False LOC110529122
XM_036985658.1 mRNA downstream 48683 53462034 ~ 53478913 (-) False LOC110529122
XM_036985657.1 mRNA downstream 167351 53342603 ~ 53360245 (-) True nsun4
XM_036985654.1 mRNA downstream 269081 53255197 ~ 53258515 (-) True LOC110530106
XM_021612923.2 mRNA downstream 269766 53255197 ~ 53257830 (-) False LOC110530106
XM_036985662.1 mRNA upstream 65716 53599635 ~ 53633617 (-) False LOC110530113
XM_036985659.1 mRNA upstream 65716 53599635 ~ 53635576 (-) False LOC110530113
XM_036985660.1 mRNA upstream 65716 53599635 ~ 53635578 (-) False LOC110530113
XM_036985661.1 mRNA upstream 65716 53599635 ~ 53635592 (-) True LOC110530113
XM_036985663.1 mRNA upstream 101869 53635788 ~ 53648362 (-) False LOC110530114
TU820769 other downstream 27866 53498148 ~ 53499730 (-) True G722459
TU820029 other downstream 63832 53463182 ~ 53463764 (-) False LOC110529122
TU819491 other downstream 766145 52761039 ~ 52761451 (-) True G721275
TU817704 other downstream 2268577 51252355 ~ 51259019 (-) True LOC110530043
TU817090 other downstream 2588125 50936928 ~ 50939471 (-) True G719151
TU820950 other upstream 269524 53803443 ~ 53856065 (-) True G722602
TU821019 other upstream 392309 53926228 ~ 53927959 (-) True G722670
TU821119 other upstream 590460 54124379 ~ 54139341 (-) True G722761
TU821220 other upstream 717195 54251114 ~ 54251546 (-) True G722854
TU821231 other upstream 747766 54281685 ~ 54281978 (-) True G722864

Expression Profile