RNA id: XM_036985661.1


Basic Information

Item Value
RNA id XM_036985661.1
length 7277
RNA type mRNA
GC content 0.49
exon number 23
gene id LOC110530113
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53599635 ~ 53635592 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCTTTTAAACGTTAACCACTGAtgatccattatattgaccagatacCCCAAAGGGCCAGGTTTCCAGTCGAGAAGCACGCCATCCCAGGAGGAGCTGAAGGCGGAACACGTCTCGTACTTACGGCAGTAGCCAGATCTCCGGCGCAACGATGGCCGACTTCTTGCAGAATACTTCCGGTTACTACAAAAAAACGAGCGACGCCATCATGTTCGCCCACAAGGACTTCTCTCCCTTCGCATCTTGACGACCCCTGGGGGGCACATTCAACACCTCACCTTGAGGACACACACTGGGGCTGCGTCTCAATAGTCTAGTAGCTTCCTCTCACAGGCACTTTAGTGAGGACAATACTCTTCTGGTTAGCAGTTGTCACTAGTATGTACAGTGGCCCTCAATATCTAGAGTATTGATGAAATATGAATGCTTTTATGGTGGTTAGATTTTTACTGTGTACTGTTCTTATTTGCATGAGCTGTGTTGAAACAAAGTCAAATCAACTCTGTTGATATAGCAATCGCAAGAATTACACTTATTGGGGTGAATgaaagaaaatgtattatttaatgtACACAACGCAATCACACAACCATGACTTGACAGCTTCAGGTGTACTCTGGGAACTGTAGTCCTCTTAGTTCAGAAAATTACAaaggtgtttttcattttgtttcatttttgttgttgaagacTGATCTCACCAAATCAGAAAGACAACAAACAGTTCATCAGACTTTGGTGTAGGGTACAGTACATTCTGACTTGGTTCCCCTTCCCGGTGGCTCAAGTTAGTTTTTTAGATCATAACACATTCCCTTAACCTGAAACTAACCTGAAACACTCAAAATGACATTTACATTTTCTACATGCTTTAGTTTCAGGTTAAGGGAATGTGTAAatggtttattggtgttaaattACACAATTTATGCTATcttggaccaccaggctgctgatgtcatgcaaCTTATACAAACATGTCGATAGATGTAGTTtgaaccagcctttagtcttgaaatcttttaGTACGCTGCCATACTTGCTGTTTAGCACTTGGCCTcacgtgaatccttaaagagatgtcTGGGGCTAAGGCTTTAGATTGTGTGAACCATGCTGGATGGTTGTGTTGACAAAgaaaagaaaagctctctcaaaCGTGTTGTCACAAGTTTATCAAATGCAAAAAACTAaatttaaaatgttgctacataagaccaaaaaGAGTCGGTCGGTCACATACGTGCACTTCAGGAGACAGTTGTATGATATTTTTTGTTCAACACAACCACGATTTGACACAGTCGTAGCTTGGTAACATCAATTGTATTTTGGGAACTGTAGTCCTTTTAGTTCAGCAAATCACAAAGGCGTCAGCATGGCCACTGCCCTTTAAATACGCAACTCGTTGCTTCAaaccacacccacccaccaaaCCGGAGCAAACGTACCTCAAAGTCTGTTCAAGAACTGTGGTTCGGCAACGTAGCAAACGTTTAAGCGAACTGAACGCACCTCAGTATGTGGCCGATCTAGTTTCAGGTGTTTCGTTGGTTACGTTAGACTACTTACTGTATTCTTATCATACCGTTTAGAACGGTTAGTGTTCCTTCATCAAGAGACGAGTATTTTCACATCAGATGCCACCATGCATCAACCAACGACAATGTAGTTTTTTAAACCAGTCTCTATATTTGTGTAGTGATAATAATCACATTTATTTGGAAAAAAATGTTGGCTGATATTGCACGTCGACAAAATCGTTCACTGATTGGCTCACTAGCTACGTCTGAACTTATGCGTATGATGGTAAACATCTGAGCGTGCGCTTGCGTACTGGTAGTAATGGAGGACAGGTCCTTCTCTTCGGGGTAAAATCGGAATTACCATTGATATCAAGACAACAACTGCCCAATGATTATCGGTTGAAGCTGTTTAACATCGTTGGGCCATTGTATTTAGCATGGCATCCGATTCGGGGCCTCAGGCTCCCGGCTCCAAAGGGATCATGACCTTTCACCCCACCACTGAGGAGTTCCAGAACTTCAGCCGCTACATTGCCTACATGGAGTCCCAGGGAGCACACAAAGCCGGTCTGGCTAAAATCGTGCCACCGAAGGATTGGAAACCCAGGAAGTCCTATGACGATATAGATGACCTGGTGATCCCAGCTCCCATCCAGCAGGTAGTGACGGGCCAGTCAGGTCTGTTCACCCAGTACAACATCCAGAAGAAGCCCATGACCGTCCGAGAGTTCCGGAAGACGGCCAACAGCGACAAGTTCTGCAGTCCTCGCTATACCGACTTTGAAGAGCTGGAGAGGAAGTACTGGAAGAATGTGACTTTTAACCCACCCATCTACGGGGCTGATGTAAATGGAACGCTCTATGACCCTGATGTGACCGATTGGAACATCGGCAAACTGAGCACCATCCTGGACACGGTGGAGCACGAGAGTGGCATCACCATCGAGGGGGTGAACACGCCCTACCTGTACTTTGGCATGTGGAAGACCACCTTTGCCTGGCACACCGAAGACATGGATCTCTACAGTATCAACTACCTCCACTTTGGAGCGCCCAAGTCCTGGTACTGCGTTCCTCCAGAGCATGGGAAAAGAATGGAGCGCTTGGCTCAAGGGTTTTTCCCTGGAAGCCACCAAAATTGCGAAGCCTTCCTGAGGCACAAGATgaccctcatctctccctccatattGAGGAAATATGGCATTCCATTTGAGAAGATCACTCAGGAGCCAGGTGAATTCATGGTGACGTTTCCCTATAGCTACCACGCCGGCTTTAACCACGGCTATAACTGTGCAGAGTCCACTAACTTTGCCACTGAAAGATGGATTGAGTATGGAAAGCGAGCCATACTGTGTTCATGCAGGAAGGACATGGTGAAGATCTCCATGGACCTGTTTGTGAAGAAGTACCAGCCGGAACGCTACGAGCAGTGGCTGGCGGGTCGGGACACGGGGTCTATTGACCACTCACGACCCACCCCAGAGGCCAAGGAGttcctgggggaggaggaggggagatgcaGTCCTTCCCATGAGCCCTGTGTGGAGGAGCTCAAcacggagggggagagaaagagCCCCACACAGAGGATAGGGACCAAGAGGCACAGAGTGTGTCTGGATGTACCTGACGAGGTGGTCCCtaaagatgaggaagaggagtaTGGAAAGAAAGCCAGACTTGGCCTCACCACTCAGGGCACAGGAGCAGAGGAGTGCAAAGATACAGTCACTTTGATGGACCTCCCTAATGTAAAGACGGACCCAATGCAGGGCAACCGCAGCAGAAGCACTACTCCGCAAAAAGTCACCATCCCCTCCATCAGCAATCATGCGACGGCCATTTTGGCTCAACCCCAGTCGCACAGAAACAGGCACCTTCCAGTAGTGGCTCCTCCAGCCAGGACCGGCCCCTCCACCCAGCCGATCAGAAAGCTAGGGGTGGCCAGCCTGCTCTTTCATAAGACCCAGAGCCCTAAGGAGGCCCTGCAGGGCCACAGCTACGCCCGTGAGAACCAGCAGCAGATTCACCACACCCACCTCCATGTGCACAGTTACGCCAGGGAGCACCTGCCACGGCACCTCCAACCCCACCTCCAACTCAAGGCCAAGCCCCAGGCCCAAGTCAAGGCCGAGCAGCAGGAGTCCCACGTCCCATCTACCAAAGGAGAGCAGAACCAGGCCGACGCACAGATTCCCTGTaagggagaaccggttgaaaccAAAGCCCAGACCCAAGGCCTCGGTAAGTGGCGGCAGCATCCTGGCGAGGCCCAGGCTTGGGAGGAGAGGTCCGAAGCCAGATCCCCTAGCAGTCCAGAGCCTGTCCAGACCCAAGCACACACCAGGGCAGCCAAGAGGGTCGAGGCGGAGGTCCGAAGGGACAGGCGGAAGCAATGTCTTTCCCCTGTGCAGGCGGAGGTAACTTTAATGAAGCAGACAAACGTACGTCCAAGTAAGCCGACGATCTTACGTCCAAGTAAGCTGACAAACTTAAGTCCAAGTAAGCAGACGGACTCAAGTTCAAGTAAGGAGACGGATTCCAGTCAGAGTAAGCAGACGGAATGCAAGAGCATGAAGAGCAAACCGCATCCTCTCCTCCGCAAGCTGCCCAAACAGCACCCACTACTCAGGCCCAGGGAAAGCTCTAGTGATGACGATGAGCTGTATGTGAATATGGAGGATGAACCAGAGGAGACGGAAGAGTGGGCCAAGCCCCTTGCCCAGCTCTGGCAGAGTAGACCCTACAACCCCCAGGCGGAGAGGGAATACAACCAACTCATGGGCCTGCAGGCCCCCTACTGCTCCATCTGCCTGCTTTTCCACACATATGACCAGTCTGAGTCTAGCGGCAACCCCAGCTACACTCTAAAAGGCCGGCGAGGGGGCAGACAGCGGTCCAAGCCCCTGATCCCGGAGATGTGTTTCAGCACCACCAATGACAAGaccaacaacagcagcaacagcggcGAGGGCCAACTTTCCACCCCTCACCTGGAGGAGGACGGTACCAGCCTCCTGGTCAGCTGCTCCCAGTGCTGTGTCCGTGTTCATGCCAGTTGCTATGGAATTTCTGCAGACCAAGTGTCAGATGAGTGGATGTGTGCCCGCTGTGAGGCCAACGCTTTAACTGAGgaCTGCTGCCTGTGCTCACTGCGAGGGGGAGCTCTACAGAGAGCCAACAACGACAAGTGGGTGCACGTGCTGTGTGCGCTCGCGGTCCTGGAGGCGCGGTTCGTGAACATCGCCCACCGCAATCCCGTGGACCTCAGCTACATCCCTCTGGCCAGGTTCCAACTGaaGTGTTTCTACTGTAAGCGGCGGGTGAAGAGGGACGTGGGCTGTTGTGTGCAGTGTTCCCATGGCCGCTGCACCACCGCCGTCCACCCCACCTGCGCCCAGGCTGCTGGCCAGCTCATGCAGCCTGACGACTGGCCCTTCATCGTCCACGTCACCTGCTACAGGCACAAGTCACCCGTCCTGCCGGAGCGCAATAAGGCGGCCATGCGAGAGCTAGAGGTTGGCCAGAATGTTATCTGTAAGCACAAAAATGGCCGCTACTACCAGTGTGAGGTGCTGGAGCTGACCATCGCCACCTTCTACGAGGTCGTCTTCGATGACGGCTCCTACAGCGACAACCTCTTCCCAGAGGACATTGAGAATCGGGACTGCGTGAAGCTGGGCCCGCCAACAGTGGGCGACGTAGTGCAGGTGCGCTGGACCGACAACCTGCTTTACGGGGCCAAGTTTGTCGCGTCGCACTCCATCCCTATGTTCCAGATGGAGTTTGAGGACGGGTCGTCGCTGTCTGCCAAGAGGGAAGAAGTCTACAGTCTAGACGAGGAGCTGCCCAAACGAGTCAAGTCCCGAATGTCCAAGGCATCAGACATGCGCTTCGACGGGATCTTCACGGAGAAGGAGGTGAAGCAGGGCTCCAAAAGACAGAGAGTCATCAACTCCCGTTACAGAGAGGACTATATCGAGCCTCTCATATACAGAGCTATCATGGAATAACCATCTTTCTctacttccttataaactcaccaCACACCCAGAGAGTGGGGCATCTCTGGGCACCCACAGCCTTGACAAGTGGCTCCAACTCTGGGTACCAGTACGAACAAACTCTCCCATGTCCCTTGGGCATTTTTGTAAACCAAGGCTGGGACTTTAAAGGAGTTTCTGCTCTTCATGAACCCTCCCCTTATTTCTGTGAATGCTATCTTTATCCTCTTTTGCTGAAATAGTTCAATAAAATATACAAATTGGAATTGAAACTAGTCATTGAACCGGAACCGCAGGTTTTTATTTATATACATATTTCGATGACGACCTGCTCAACTCTAGAATTTCATTTCTGCATTATCTCCAGCCCTCTTTGGACAATTTGTTTCTCCTCTGAACTTGAGGTGGCATTTTAATCTCTAGCTTTACCCATCCAAAAGCATTACTTGGTCGATGAAAACAATGGTATTTCACCATGCAGGCCATTATTCAATCCGATTTTCAGTAATATGCTGTTGagtgatttatttttaatccccaAACATGTTTTGCTTCATACTCTTTGCAATACATACATTTATGGACTTCATAGGAATGTGCAGGTTTGATAGTGTCTACTGTGACAATAGGAAGAAGTTAGTAGCCCAAGCCTTAAGTTCAAAGGGCAGTGTTTTCTTGTTAAGTTTAGCTTTACAACTTTAAAGCTTTGGATTTATTGCATTTAATTTATCTAAGTTGTATGAGTTTGAGAATGCAACTGTTTGATACCACAGCTCACTGTGCTTACAATCTCAGAAAATCCCCAAGATGTATTTATTTGTTATGTGGATAGGTTTTTGGACGCAAGTTGGTTCTCGATTCTTGTTATTGTTTTTTTCTAAGCCATCCTGGGTTGCattggtagtgtgtgtgtatatatgccaTAGAGAATGAACGAGAGCTTCCCTACATAGTTCCCATTATGGCATCTTAGAATGCACGGGGAACACCATTTAggcaatctccattttgaagtagtacattttcttcacgattggctgatccctcctgatgacctggctggacatgactccaacaggtTCACCAGGAGGAATCGGCCAATGAAGTTCGAAGTCCCACTCAGTTCAATACATTTTGGTGAGGCCCATGCTAAAATGGCCCTGTGGCCGCTAGAGGCCTCTGTCATTCTCTATAGTATATGCCAACATGGGTCAACCTCCTACTCCCTGCAGAAAAAAGCACTTATTTCTCTCCCTAAAGTACCCATGGCATGTCTATCATTGCTTTTGCAGGTGGCTGTTAAGTTCAGGTACATAACTGAGCATGTGCAGAAAAGTTAGTTGGTCAATTACAGCCTAGGTGTATACTAGTTGGTTTGTGGTCCTATCACAACCAGTGAGAAAACTGCAGAAAGTTTTTAtaggaaaaatatattttcatatcATTAGAAGAATGTTCTTCCTCCTAATGCTTTGTTGAAGTTTCTTGTTGACATAAATCGTTACCATCTTTGGATAGTATTGTATATGTAGCTAATTTAAAGCTGTAAAGTCTATCTCAGGaggacgcgcacacacacacctccccctccacctcttgAGCCGCACCGCCGATTTACGTTTTGTTTCCATGGCCACTGTTTGAAGCGCTTGGATTGATTTGGTATGTACACGGGAAGTGTCAACTCTGTGCATTACATTTGTAAACATCAACTGTTGCAGTAAAGACCGGACTAAGAAAAGCTA

Function

GO: NA

KEGG:

id description
K06709 KDM4, JMJD2, JHDM3; [histone H3]-trimethyl-L-lysine9/36 demethylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU820801 lncRNA downstream 3862 53595556 ~ 53595773 (-) True G722488
TU820773 lncRNA downstream 65716 53527596 ~ 53533919 (-) True LOC118965526
TU820770 lncRNA downstream 102208 53495804 ~ 53497427 (-) False G722459
TU820062 lncRNA downstream 118510 53480893 ~ 53481125 (-) True G721825
TU820041 lncRNA downstream 122152 53463800 ~ 53477483 (-) True LOC110529122
TU820815 lncRNA upstream 257 53635849 ~ 53709367 (-) True LOC110530114
TU820840 lncRNA upstream 42333 53677925 ~ 53679995 (-) True G722523
TU820885 lncRNA upstream 189432 53825024 ~ 53828481 (-) True LOC110530934
TU820960 lncRNA upstream 193087 53828679 ~ 53829059 (-) True G722612
TU821007 lncRNA upstream 269556 53905148 ~ 53905462 (-) True G722659
XM_021612932.2 mRNA downstream 14014 53500456 ~ 53585621 (-) False LOC110530111
XM_021612933.2 mRNA downstream 14014 53500456 ~ 53585621 (-) True LOC110530111
XM_021612931.2 mRNA downstream 14015 53500456 ~ 53585620 (-) False LOC110530111
XM_036985663.1 mRNA upstream 196 53635788 ~ 53648362 (-) False LOC110530114
XM_021612942.2 mRNA upstream 196 53635788 ~ 53660006 (-) False LOC110530114
XM_036985669.1 mRNA upstream 46016 53681608 ~ 53706662 (-) False LOC110530116
XM_021612944.2 mRNA upstream 46016 53681608 ~ 53712234 (-) True LOC110530116
trnak-cuu-2 mRNA upstream 61036 53696628 ~ 53696700 (-) True trnak-cuu-2
TU820769 other downstream 99905 53498148 ~ 53499730 (-) True G722459
TU820029 other downstream 135871 53463182 ~ 53463764 (-) False LOC110529122
TU819491 other downstream 838184 52761039 ~ 52761451 (-) True G721275
TU817704 other downstream 2340616 51252355 ~ 51259019 (-) True LOC110530043
TU817090 other downstream 2660164 50936928 ~ 50939471 (-) True G719151
TU820950 other upstream 167851 53803443 ~ 53856065 (-) True G722602
TU821019 other upstream 290636 53926228 ~ 53927959 (-) True G722670
TU821119 other upstream 488787 54124379 ~ 54139341 (-) True G722761
TU821220 other upstream 615522 54251114 ~ 54251546 (-) True G722854
TU821231 other upstream 646093 54281685 ~ 54281978 (-) True G722864

Expression Profile