RNA id: XM_036985669.1


Basic Information

Item Value
RNA id XM_036985669.1
length 4087
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC110530116
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53681608 ~ 53712234 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTTAGTGGAGTAAACACTTGTTTGGTGTTTATGTAATGGTGAGCCTCGTGTTCTGTTGCGCAGGAAGCTACTTGAATTGCACAAGCCCTATGCAATGTAGAAAAATGTCATTTCTGATTCTTTCACGATTTGGGATGATCTGTGCGCATTTCAAATTGTCTGAGGAGAGAAAGGAGCAACAAACTGCTTTGGCCTTGTTGACAAGTAGAAAAGTGATAAAGCTGGCTGTGAGGATTTAGCACTTTGGCAGAATCCTCCGTCTCTCCTTCTGTCACCTCTTTCCCCACTACACGGCACTGATGAGAACTGTTCTTACCCTCCATCTGTCTATGCATCCCCCctttgccctctctctcctcccttctaccTCTCCCCCTTTAGACAAATTGTTTGGGAAACGCCTCTCGCAGGCCAGACGGTACATCATGTCCCATAAATCCTGGCTGAAAATGGTTCCCACGGAAGACTGTGATATCCTAATGACATTCTCAGacacCATAGATGACCACACCTTGCTATGGCTGCTGAACCATATCCGACTGGGAATCCCACAAGCTAAAATCCAGATCAGACAGCATCAACACACACAGGGATATGCGTTCTGTATTACAAGCACATTCGAGAACTTGCTGCgtggtgcagagctgttgggAATGCGCAAAGTGGTGAAACCACAGTACGGAGGCGGAACACGCAGGTTTTCCTGTGAGGAAGATAACATCTATGAGAACATAGAGAGCGAATTGTGCTTTTTCACCTCACAGGAGCGTCAGAGTATCATCAAGTACTGGCTGGATAACCTACGTGCCAAACCAGGGGCGGTCCTTCACAACATTCACTTCCTGGAGGGACAACCAATCATTCCAGAACTGGTGGCCAGAGGTGTAATCTGTCAAGTGTTTCCTCTACACGAGCAACGGATCCTCAGTCAGCTGATGACGTCATGGGTCCAAGCTGTCTGTGAGAGACAGCCTTTGGATGACGTCTGTGATTACTTTGGGGTGAAAATCGGCATGTACTTTGCCTGGCTGGGCTTCTACACCAACTCCATGCTGTACCCTGCCGTCGTTGGCTTCCTGATGTGGATCCTGGCAGAGGCTGACCAGACCAGCCAGGACATCTGCTGTGTGGTGTTTGCCCTTTTCAACGTGGTGTGGGCGACGCTCTTCCTGGAGAGATGGAAGCGGAGAGAGGCCGAGCTGGCATACATGTGGGGAACACTGGACACCCCCGCCGAGCCCCTTGAGGAGCCCCGTCGCCAGTTTCGGGGTGTGAAGCGGTGCAGTCCAATAACAGGCTGTGAGGAGTTATACTACCCACCCTGGAAGAGGACAATGTTCAGGTGGATGGTCAGCCTCCccatctgtctcctctgtctctgcttcgtctTCTTGGCCATGCTTGTCTGTCTGGAGATGCAGGAGTTTGTGATGGAAATTAAGGAGTTACCCAGTATCACAAGATTCATTCCTAAAATGTTGCTGGCCATCGTTGTGACTGTATGTGATGAGGTGTATAGGAAGATCGCCCATTGGCTCAATTATATGGAGAACTACAGACTTCAGAGTGCCTATGAGAATAATCTCATCATTAAAATGGTTTTTTTTGAGTTTATCAATTCTTACCTTAGCCTTTTCTACATCGGATTCTACCTCAAGGACATGGAGCGACTGAAGGAGACGCTAGCCACTCTCCTGATCTTCCGCCAGTTCCTCCAGAACATCAAGGAAGTGCTCCAGCCTTATCTGTACGAGCATCACAAACTAGGAGTATTTACCCCCAAGGTCGTGTGGGAGATTCTCCAGGCCATAGTGCTCAAATACAGCCGCCTGGCTCTAGGAAAGTCCCAGGCTTCATGGACTATCCAGTCCCTGCTAAGCCCCAAAGGCCCTGCCACACTTCctggacagacagaacagaagaagagaggagatctAAAAGCTGGCTATAGGTTTACAGAGGAAGAGTGGGACATAAATTACACACTGAGGCAACGGAAGATTAGCTTCAATGAGAAGGTGCATGTTGCCAGGGACATTGCCTTGGCGACCCAGCCAGAGGACAGCTTCTTGGAGGAGAGTCCCACATTGGTGGAGGAGGGCATGGATCCTTCCAGCATCTTTGAGATAGTCTCTGACATTGTCACCTATGAGTCCTCTGAGACCAAGAAGACTAGTGTCTCCCCACCAAATGGCTATGACACGCTAGTATGTCAGAGATGGAAGAGTCCAATCCCAGAGAAAAAGGCCACAAAGTCCTGGATTGACCCGCCTGATGAGCCCAAGTCTGTCATTCTCAGCCAAGCAGAGGTTGAGAGCTGCATGCAGACATATGAGGACACCCTGCAGGACTACCAGGAGATGTTCATCCAGTTTGGCTACGTGGTGCTCTTCTCCTCCGCCTTCCCGCTGGCTGCTATGTGGGCcctcatcaacaacatcatcgAAATCCGGAGTGACGCCTTGAAGCTCTGCACAGGCCTGCAGAGGCCCTTTGGCCAGAGGGTGGAGAGCATTGgacagtggcagACAGCAATGGAGGCCATGGGCTTGATAGCCATTATGGTGAACTGTTATCTCATTGGCCAGTGTGGTCAGCTGCAGCGTCTCTTCCCCTGGCTGAGCCCTGAGATGGTCATCATCTCCATCGTGGTACTGGAGCATTTTGCCATCCTCCTCAAATACGTCATCCATGTGGCCATCCCTGATATTCCTGGATGGGTCGCAGACGAGATGGCCAAACTAGAGTATCGTCGAAGGGAGGCTTTCAAGAAGCACGAGCGTCAGGCCCAGCAGCACTCCCAGCAACAGCTGAGGAGGCAGCTTGAGGAGGAGGAGCTGCAGCGTCAGGAGGAGCTCCAGACCGAGGCCCAGCAGGAAAGCGAGTACCACAAGGCTGACAAACAGCACCACCATGAGAAGGCCCAGTGGAAGCCTGTGGACAAGCCCAAGAGACCCAGCTCTCTGCTGGGCAACAGCAATGTAATGAAGCTCAAGCAGATCTTCCCCCAGCAGGGGAAGTTCTCCTCAGGCACGGCCCTCTCTCCGCAGTCCCCAACCGGGGGAGAAGCCAAACTAGCAGGCTTCCTCAGCTTCAAGTTCCGGAAGTCTCCGGAGTTGAAGAAGGAGCCGTTGTCGGTAACACCAGCACCGGGGACCGTGGTGACGGCTGCGTCCGTGAACCAGGAAAGGTCCCAGTCCCCCAACAGGACCTTCAGCCAAGGGAAGCTGTTCAGCTTTAGCAGATCAGAGGGGGCAGTGGTGTGTGCGAACGGGCCTCAGCTGTCCAAACCAGGCGATGCTACCCCCCAAACGACTCCTAACAGTCAGCCCACCAGGCAGGACCTGAATACAACTCCCTCAGGCGAGTTGTTACCCTCGTctgagagcgagaggagagaaacaAACAAGACAATCTAACGATACTGACACTTCTGGCTCCAAGTGTTAGTCAATCATCATGGCAATATGTAAAATGTAAGAAAGGGATGCAGAGAACAATAACGTGTTATTATTGTTAACATATCAACATGGTTTAGGTCATACTGAATAAACTAAATAAGCTAAAATGTAATGTAAGGTCAGAATGTAAGGTCAGGTTTTGGGTTCATTCTCCACCATCCAAATGATATAACAGTAAATATAGGCTATATCTGTTCTATATACTGACACCCTAAGTGTATACTATGTACAAATTGCAACAGTTTACCCCCTTGAATGAGGCCCTCCCTAGTACCACAACTAAATGCAGTTATAAGACTGCATGACTTGTGGTTCTGATCATCATGAAGCGATAAGATCTGGATGGCAGTTTATTCCATCCCATATTTTGTCTTTCCATTCATCAGATTTGATGTGTAAAAAGCATGGCGAAACATCTGCATGCCTGAAATAAATGTCTTATTCAGCACCTTATAAGCCAAAGACATCTTATATTCCTGCAATAGTACAGAATGAGCACATTCACGGTGActgaaaaatattttatttttcttaactTTGTTTTTCTATTAATTATTTTAGCACATGAAATAGTGAATGTACCGTCGATGCAAAACACACTCCAATAAACTTCATGAGACCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU820840 lncRNA downstream 1613 53677925 ~ 53679995 (-) True G722523
TU820801 lncRNA downstream 85835 53595556 ~ 53595773 (-) True G722488
TU820773 lncRNA downstream 147689 53527596 ~ 53533919 (-) True LOC118965526
TU820770 lncRNA downstream 184181 53495804 ~ 53497427 (-) False G722459
TU820062 lncRNA downstream 200483 53480893 ~ 53481125 (-) True G721825
TU820885 lncRNA upstream 118362 53825024 ~ 53828481 (-) True LOC110530934
TU820960 lncRNA upstream 122017 53828679 ~ 53829059 (-) True G722612
TU821007 lncRNA upstream 198486 53905148 ~ 53905462 (-) True G722659
TU821035 lncRNA upstream 237932 53944594 ~ 53944946 (-) True G722686
TU821043 lncRNA upstream 245533 53952195 ~ 53952400 (-) True G722694
XM_021612942.2 mRNA downstream 21602 53635788 ~ 53660006 (-) False LOC110530114
XM_036985663.1 mRNA downstream 33246 53635788 ~ 53648362 (-) False LOC110530114
XM_036985661.1 mRNA downstream 46016 53599635 ~ 53635592 (-) True LOC110530113
XM_036985660.1 mRNA downstream 46030 53599635 ~ 53635578 (-) False LOC110530113
XM_036985659.1 mRNA downstream 46032 53599635 ~ 53635576 (-) False LOC110530113
XM_021612945.2 mRNA upstream 15510 53722172 ~ 53728671 (-) True plvapa
XM_021612947.2 mRNA upstream 100001 53806663 ~ 53812189 (-) False ocel1
XR_002474481.2 mRNA upstream 101405 53808067 ~ 53812192 (-) True ocel1
XM_036985674.1 mRNA upstream 112044 53818706 ~ 53880779 (-) False LOC110530934
XM_036985675.1 mRNA upstream 112044 53818706 ~ 53880779 (-) False LOC110530934
TU820769 other downstream 181878 53498148 ~ 53499730 (-) True G722459
TU820029 other downstream 217844 53463182 ~ 53463764 (-) False LOC110529122
TU819491 other downstream 920157 52761039 ~ 52761451 (-) True G721275
TU817704 other downstream 2422589 51252355 ~ 51259019 (-) True LOC110530043
TU817090 other downstream 2742137 50936928 ~ 50939471 (-) True G719151
TU820950 other upstream 96781 53803443 ~ 53856065 (-) True G722602
TU821019 other upstream 219566 53926228 ~ 53927959 (-) True G722670
TU821119 other upstream 417717 54124379 ~ 54139341 (-) True G722761
TU821220 other upstream 544452 54251114 ~ 54251546 (-) True G722854
TU821231 other upstream 575023 54281685 ~ 54281978 (-) True G722864

Expression Profile