RNA id: XM_021612947.2


Basic Information

Item Value
RNA id XM_021612947.2
length 2496
RNA type mRNA
GC content 0.48
exon number 6
gene id ocel1
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53806663 ~ 53812192 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGCTTCCCTCTCAGCTCAACAGCCTGCAATAACAAAACTGAGTCACCTAAGAAGGTTTGGCTGGGCCTGCTGTAGAGGCATCCATTTTGAGAAGGGTTTTTGCCTCACAGCACTCAAATGTCTGCTAAACTCATAACTGGCCAGTGTGGAGCTTGCCCTTAGCCACAACAAGTTCCTCTATGACAAGAAATTATATCTTTCTTCCATCCTCAATGATTAACTAAACCCAGAGCCCCCTTACTGGATATCAGCCCGTAGTATGAAAAGCTGGAAGAAGATATTCAAGAGAGGAGACCCGGAGAGTGTGGATGGGAACTCCTCTTTGCAGAAAAACTCCTTGAACAACGCCCCGCTAGAGCTAACACCTCAGAGGGCCTTAGATGACGACCTTTCAGATGACGCAAACTCCACTGCCCACTCATCCAGCACTCCCCCATATGTACAAGGAGTGGGGGGTGGTGGGGACGAGGGGACCCTTAAGGACAGGTTGAGAACTCTCCTCCCCCAATCATGGGGCAGTATTCTCCAGAAATGGAGCAATGGGGATGCTGACTCTGACCTGGGCTCCGCAGGGATCAAGATTGTGCCCAATGGGACCAGGGTGAGTCCACCTGTCAGTCCTATACTGGAGAGGAGGTACTGGGACACTCAGGACTCACTGGGGACCTCCAGCAAGAGTTCCCATAGGCCCTTGTTGAGGGACGTTCCTATAGACAATGACCTACTCCATTATCTTCCAGAGGAATCAGAGCTGACCAGTATCCATCCAGCTGAGTACTATGCTGAGAAGGTGGAGGTCTACAAGCTGAAGTACTCCTATATGAAATCATGGCCTGGGTTACTGAGACTCCTGGCTGGGTTTGAACTTCTCTTTGGCGGTATGGTCCTTGCCTGTGTCTGTGCCTACATCCACAAGGACAGTGAGTGGTCGAACTCCTATGGACTGTACAATGGTGCGTATAACAATGGATATGGCACATCGGGGAAGTCCTATAAGGGACCTATGACTCTATTCGTGATAGCGGTGGTTGGGGTGGCGTGGATTGTAACCATCCTCCTACTGGTAATAGGGCTGACTATGTACTACCGTACCATCCTCCTGGACTCACCCTGGTGGCCTCTCACTGAAGGCGTCATCAACGTcgccctgttcctcctctacATGGCTGCTGGTATCGTGTACCTGAATGACCTCAACCGTGGGGGTTTGTGTTACATGACTATAGGTATTAACCCCATAACGTCCAGCCTGTGTCGGGTGGACGGGGGCCAGATGGCTGGCACGGCTTTCATCTTCATCAACATGCTGATGTACCTCATCAGCTTCCTGGTGTGTCTGAAGATGTGGAGGCACGAGGCCACCCGCAGGGAGATGGAGTTCTTTGAGAACCAGGAGAATCTGAGGCCCATCCCTTTGGCCCAGACCAAATCTCCCAATCCGCAGACCAAGAGGATTGTGTTTGAGGATGAGATGGACAGCTCAATGAGGGCAACCAAACTCCTCCACGTCACAGACTTTCAGCAAGAGGAGCCAGGCAGCCGGAACAGAGCCATCCCCACAGGGTACGCCCAGAAGCCCAGAGTCATCGCCGATTATGTAATGAAGTATCCAGAAATCTCCTCTTTGGAGGATAGGGAGAAATACAAAGCTGTCTTCAACGACCAGTATCAGGAGTACAAGGACCTTCACAAAGACATCAGTGAGACCCTCGTGAAGTTCAGAGAGCTGGATGCCATGATGAGTAAACTCCTCAAAGATGGCAACAGTCATGAGGAACAGAAGAGAATCCAACGGATTTTGAAGAAGTACGAGCAAAAAAAGAGTGACCCTGCCTTCCTGGAGAAGAAGGAACGATGTGACTATCTGAAAGCTAAATTAAGCCACATCAAGAACAGGATCCGCAATTTCGACCAAGACACCATGGCAAAGGGTCGGACGTGAAGAAATAGCACGTACACAGAGGAAACAAAGGGGCCATTATTATTCTGTTCCTGTCACGTCTTCTCTGTGAGACTGTTATTTCAGCACTAATTGTGTTTTTGGCGTGTTACTTAAGTAGGTTTCAGTAAATGGCTGTACAAATCAGTAAACTGTGtgttgttacattatagcctgcAACACTTTTTGTGCTTACTGTAAAGATGACTTTCCCACTAATATTGTGTGTGAGTTTCAGTCATGAAGTGAATGACCTCGTAAACTCATAAACGGAGCGCAGTTGTGTACATACCTTTGGACTTTTGTGAACAATGCTAACAGGGTCAATTCCGATTGCATCGGCAAGCATTGCATTTACACTTGTAGGCTTACAGGGCAATACACTATCAAATCCTTGGAGAGTTTTTCATATGAAATTTAAAATATGAAATGCTAAAAGGGCAGTCGAGAACCAGCAATCATTTTGAAGCTGTTACACAGTAGGCTAATGACAtgccccagctagcacatttgattccttggaagttgtgggaatgtatgtttttggtttcacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU820815 lncRNA downstream 97296 53635849 ~ 53709367 (-) True LOC110530114
TU820840 lncRNA downstream 126668 53677925 ~ 53679995 (-) True G722523
TU820801 lncRNA downstream 210890 53595556 ~ 53595773 (-) True G722488
TU820773 lncRNA downstream 272744 53527596 ~ 53533919 (-) True LOC118965526
TU820770 lncRNA downstream 309236 53495804 ~ 53497427 (-) False G722459
TU820885 lncRNA upstream 12835 53825024 ~ 53828481 (-) True LOC110530934
TU820960 lncRNA upstream 16490 53828679 ~ 53829059 (-) True G722612
TU821007 lncRNA upstream 92959 53905148 ~ 53905462 (-) True G722659
TU821035 lncRNA upstream 132405 53944594 ~ 53944946 (-) True G722686
TU821043 lncRNA upstream 140006 53952195 ~ 53952400 (-) True G722694
XM_021612945.2 mRNA downstream 77992 53722172 ~ 53728671 (-) True plvapa
XM_021612944.2 mRNA downstream 94429 53681608 ~ 53712234 (-) True LOC110530116
XM_036985669.1 mRNA downstream 100001 53681608 ~ 53706662 (-) False LOC110530116
trnak-cuu-2 mRNA downstream 109963 53696628 ~ 53696700 (-) True trnak-cuu-2
XM_021612942.2 mRNA downstream 146657 53635788 ~ 53660006 (-) False LOC110530114
XM_036985674.1 mRNA upstream 6517 53818706 ~ 53880779 (-) False LOC110530934
XM_036985675.1 mRNA upstream 6517 53818706 ~ 53880779 (-) False LOC110530934
XM_036985672.1 mRNA upstream 6517 53818706 ~ 53880781 (-) False LOC110530934
XM_036985676.1 mRNA upstream 12835 53825024 ~ 53880783 (-) False LOC110530934
XM_036985677.1 mRNA upstream 12835 53825024 ~ 53880785 (-) False LOC110530934
TU820769 other downstream 306933 53498148 ~ 53499730 (-) True G722459
TU820029 other downstream 342899 53463182 ~ 53463764 (-) False LOC110529122
TU819491 other downstream 1045212 52761039 ~ 52761451 (-) True G721275
TU817704 other downstream 2547644 51252355 ~ 51259019 (-) True LOC110530043
TU817090 other downstream 2867192 50936928 ~ 50939471 (-) True G719151
TU821019 other upstream 114039 53926228 ~ 53927959 (-) True G722670
TU821119 other upstream 312190 54124379 ~ 54139341 (-) True G722761
TU821220 other upstream 438925 54251114 ~ 54251546 (-) True G722854
TU821231 other upstream 469496 54281685 ~ 54281978 (-) True G722864
TU822417 other upstream 1565092 55377281 ~ 55377776 (-) True G723955

Expression Profile