RNA id: XM_036985676.1


Basic Information

Item Value
RNA id XM_036985676.1
length 3208
RNA type mRNA
GC content 0.54
exon number 8
gene id LOC110530934
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53818706 ~ 53880785 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATATGTGGCTACCAATATTCTAACGAAGGCGGTGTTTTGGCCGTACGGTGACGTTTTAAGGCAGGTCCTGGTCAAACCTACCAATGAGACGAGTCGGCTCTATTCTGCTGGGACTGATCGCAATGAACGGGTGTCCGAGCTATACAAGGCAAAGGAGCATCCACAGTAAGACGCGGCTATTAAGGGGATGAGGCATCGATACGCGGGAGCTGTCTATCAGCACCAAATCCCCGACGAAGAGCGAGGCAGCGTGCAGAGCCAAGACCCAAACCCAGTCGCTCCAGTTTTCAGTCTGCCGCCCCCTCCTCCGTCTTTCAGAGAGCGTTCGACTACCACCTCGCACTACCTGAACCACCACCAACTGCCTTGTCTGAGCAAGCCCTCTCGAAGAGGTATCCATGCCTGTCAGCCGCAGCACGGCGACCCCCCGCCTCTAACAAGCTACGACATCGCCCAGCGACCTTCACACCGGGTCTGTGAACCCGCAGGGCAGCCAGCGCACCTACAGCAGAAGCTTTGGGCCGCAGCCGGTTCCCATCCGCAGTCGGAGCAGCCTTTTTTTCAGAGCTGCCACTGCAATTTTTCCGAGGAGGCGAGCCTTTCTCACCAGCGCCAGCGCCAGCCCCTCACTCACCCGCCGCAGCCCTCCCCATCTTTGCCGCCGTCGTCCTCTCTGCTGTTTTTGCAGGAATCTAATCACGGGGATAATTTGCAAAGCAGTGACAATTATCAACAGGCGAGCAACGTGGAACGCTAccggggaggtggaggaggagggcacCGAGACCAGAAGCAGTTgttgcagcaacagcagcagcagcacagcaGACTCCAACACAGGGACCCCTCCCCTGAAACAACCCGAGCAAACTCACAGAAGGGGCGCACTATAAATGTATGTGAGTCAATCGAGGCTAATCGGCGAGCATTCGAGTCCCAGACTCAGGACCTGCAACAGCTACAGCAACTCCCACAATTGCGAGCTCAACAACAGCTACTGGTGGGGAGCAGCTTCCCTGTCTACTACTGCGCCAACGGTTCAGGAGAGCTCTGTCGGAATAACCAGGCAACACTGCTGCAACAGCATCAGCAAGACGCACAGGGGCGTCCGCAGCACTGTGACCAAGACCGCAATAAGCCAGGGAGGACAAACCAAGCCAACCAGCCACAGCACCCCAACCAGCCACAGCACCCCAACCAGCCGCAGCAAATTTGCCGCGACTCTCGTGTAAACTCACCAACGCAGCCGTACGGAGGGAGCTCGTCTGCGACTGGCAGTAGCAGCAAGAGCAGCCCTAACTACGGCTCCAGCTATCACCTGTGGCCCGAGAGCCCGCAtaagggagaagagaggatacTCATCGATCATCATCAGGCAACCACTGAGCAAAAGAAGCTGAGCCATGCTGGATCCTCCCTCTCCGAGAGCAGCGGCCGACTCCCACAGATAGCCATGAACACCTGCAAGCACAATGGCGGCGTAGTGAGACCACTGGGCAGCCTGGCGTCGTCGCGGCGCAACCTAGCAGAGCTCGACTCCGAAACACAGCCCCTCCAGACGCTGCACAGTTCTGGCCTGGAGGTGGTTGTTTCCAAGGGAAACAGTGAGGACCCCGGCAAGGCGTCCAACGAGAGCCTGGTCAGGGACGGGAACGGTGCTCCTGTGAAGAAGAACAAAGACATCGGCTATAGACTCGGCCACCGGAGGGCGCTCTTTGAGAAGCGAAAGAGACTCAGTGACTACGCCCTCATCTTCGGGATGTTTGGGATTGTCGTCATGGTGACGGAGACGGAACTGTCCTGGGGAGTTTACGGCAAGGAATCTTCGTACTCATTTGCACTGAAATGCCTTATCAGCCTTTCCACTGTTATATTGCTTGGTCTTATAATAATGTACCATGCCCGGGAAATCCAGCTGTTCATGGTGGACAATGGGGCGGACGACTGGAGGATAGCCATGACGTACGAGCGCATCTTCTTCATCGTGCTGGAGCTGCTGGTGTGCGCCATCCACCCCATCCCGGGCCATTACCGCTTCACGTGGACGGCGCGGATCGCCTTCACCTACACGCCGTCGACGGCCAACGCCGACGTGGACATCATCCTCTCCATTCCCATGTTCCTGCGCCTCTACCTGATCGGCCGCGTCATGCTGCTGCACAGCAAGCTCTTCACGGACGCCTCGTCGCGCAGCATCGGCGCCCTCAACAAGATCAACTTCAATACGCGCTTCGTCATGAAGACCCTCATGACCATCTGCCCCGGCACCGTGCTGCTTGTCTTCAGCATCTCCTCCTGGATCATTGCCGCCTGGACGGTGCGCGTCTGCGAGAGGTATCATGACACACAGGAAGTGACCAGTAACTTCCTGGGAGCCATGTGGCTCATCTCTATTACCTTCCTCTCCATTGGCTACGGAGACATGGTACCTAACACGTACTGTGGGAAAGGCGTATGTCTGCTTACAGGGATCATGGGAGCGGGCTGCACTGCGCTGGTGGTCGCCGTGGTAGCCAGGAAGTTGGAGTTGACCAAGGCTGAGAAGCATGTCCACAACTTCATGATGGACACACAACTCTGCAAACGAGTAAAGAACACAGCTGCCAATGTACTCAGGGAAACATGGCTCATCTACAAACACACTAAGCTGGTCAAGAAGATAGATCACGCTAAGGTGCGCAAACACCAGCGGAAGTTTCTACAGGCCATCCATCATGAGAAGTGTAATGGTTCACTTGTTTCGTGGATGTTGTGGGGTTTAAAACTTTGTATTGTGTTCTGTCTTTGTTTTGCTCTATCACTGCAGAGCTCAGAAGTAAGTTGAGTCTTCTATGTTCCTCCTGTTTCctctacattctctctctccatgtctacgTTTGACATGCATGAACCTTCAAATGCTGGATGCCGATTGTTTTGGTTTCCTTTTAATGTTCCATTTACCCTCATCCTCTGAATGGAATGACAGAAAGCATCTACATTACCACTGATGATGACATGGTAGTGGGGTGTCTGAAGAAAGTCAGAGGCATCTGGCAGTATGAGCTTGTTGGGGCTTGTCGGCTTGGCCAGAGTCCATTCATCAATGAAGTCGCCATCTATGATGTTACCATGATTAATATAGCTacaatatgtaggctatattaaccTGCATTGGCAGTCCCATCCTTGCTCCGGATTTTGTATTAAACACATATCTTCAGAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU820815 lncRNA downstream 115657 53635849 ~ 53709367 (-) True LOC110530114
TU820840 lncRNA downstream 145029 53677925 ~ 53679995 (-) True G722523
TU820801 lncRNA downstream 229251 53595556 ~ 53595773 (-) True G722488
TU820773 lncRNA downstream 291105 53527596 ~ 53533919 (-) True LOC118965526
TU820770 lncRNA downstream 327597 53495804 ~ 53497427 (-) False G722459
TU821007 lncRNA upstream 24365 53905148 ~ 53905462 (-) True G722659
TU821035 lncRNA upstream 63811 53944594 ~ 53944946 (-) True G722686
TU821043 lncRNA upstream 71412 53952195 ~ 53952400 (-) True G722694
TU821045 lncRNA upstream 73414 53954197 ~ 53954429 (-) True G722696
TU821055 lncRNA upstream 84393 53965176 ~ 53965407 (-) True G722699
XR_002474481.2 mRNA downstream 12832 53808067 ~ 53812192 (-) True ocel1
XM_021612947.2 mRNA downstream 12835 53806663 ~ 53812189 (-) False ocel1
XM_021612945.2 mRNA downstream 96353 53722172 ~ 53728671 (-) True plvapa
XM_021612944.2 mRNA downstream 112790 53681608 ~ 53712234 (-) True LOC110530116
XM_021614230.2 mRNA upstream 34037 53914820 ~ 53917617 (-) True insl3
XM_036985678.1 mRNA upstream 85214 53965997 ~ 53995304 (-) False LOC110530121
XM_036985679.1 mRNA upstream 85214 53965997 ~ 53995304 (-) False LOC110530121
XM_036985680.1 mRNA upstream 100626 53981409 ~ 53995304 (-) True LOC110530121
XM_021612952.2 mRNA upstream 120346 54001129 ~ 54003188 (-) True LOC110530123
TU820769 other downstream 325294 53498148 ~ 53499730 (-) True G722459
TU820029 other downstream 361260 53463182 ~ 53463764 (-) False LOC110529122
TU819491 other downstream 1063573 52761039 ~ 52761451 (-) True G721275
TU817704 other downstream 2566005 51252355 ~ 51259019 (-) True LOC110530043
TU817090 other downstream 2885553 50936928 ~ 50939471 (-) True G719151
TU821019 other upstream 45445 53926228 ~ 53927959 (-) True G722670
TU821119 other upstream 243596 54124379 ~ 54139341 (-) True G722761
TU821220 other upstream 370331 54251114 ~ 54251546 (-) True G722854
TU821231 other upstream 400902 54281685 ~ 54281978 (-) True G722864
TU822417 other upstream 1496498 55377281 ~ 55377776 (-) True G723955

Expression Profile