RNA id: XM_036985679.1


Basic Information

Item Value
RNA id XM_036985679.1
length 3744
RNA type mRNA
GC content 0.52
exon number 21
gene id LOC110530121
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53965997 ~ 53995304 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTTCATTAGTGTTGCTGATGAGACGCTATTCACTTTATTACACATTCTGGGCCATGGACGCAACCTTTAGCACTAGTAATATTTGTTTTttaatagctagctaataaagccAAGGATAGTTGGGGAAATAAGTAGTAGCCGGATTGGTTGCAGAGTCTGGTCGAGGCTGGTTGGCCGGTGAATGCACAGAGTGAAGAAAGTGAAGCGTGGGAACAAAACAGAAGGTTACTGGAAAAGttGTTTAGAAGTTAATATGACGGCGGTGGACGGGCTAACAGAGAGCACAGAGGTGGTGGAGATGGAGGACGTCCCGTCTCAGTTCTACGTGGAAAAGCACTCGTGGGATGGCCTGCGTGACATCATCCACAGCAGCAGGAAGTACTCGGGAATGATCGCCAACAAAGCGCCCCATGACTTCCAGTTTGTGCAGAAAAACGATGAGTCAGGCCCCCACTCCCATCGCCTGTACTACCTCGGGATGTCTTACGGAAGTAGAGAGAACTCACTGCTCTACTCCGAAATCCCCAAGAAGATCCGGAAAGAGGCCCTCTTGGTGTTGTCGTGGAAACAGATGCTGGATCACTTCCAGGCCACCCCGCACCAGGGGGCCTATTCCCGGGAGGAGGAGCTGCTTCGGGAGCGTAAGCGTCTGGGAGCGTTTGGGATCACCTCCTACGACTACCACTCCCAGACCGGCCTGTTCCTCTTCCAGGCCAGCAACAGCCTCTTCTATTGTCAGGACGGGGGAAACAACGGCTTCATTTCTGCCCCAATGAAGCCGGTGGAGATTAAGACACAGTGCTCAGGGACCCGCATGGACCCCAAGATCTCCCCAGGAGAGCCCAACTTCATTGCATTTATCAACAACAATGACCTGTGGCTGGCTAACATCAagtctggggaggagaggagactcaCCTTCTGTCACAAAGGTCTGGATAATGTGAAGGAGGACCCCAAGTCTGCGGGCGTGGCCACGTTTGTGATCCAGGAGGAGTTTGATCGCTTCACTGGCTACTGGTGGAGTCCATCTGCCGTAGATGACTCAGATGGGGGGAAAACCCTGCATCTGCTGTATGAAGAGGTGGATGAGACGGAGGTAGAGATCATTCATGTTCCCTCTCCAGCCCTGGAGGAGCGGAAGGCCGATGCCTACAGATACCCCCGCACAGGCAGTAAAAATCCACAAACCACCCTCAAACTGGCAGAGATAAAGACTAACAACCAAGGCAAAatCATGAGCATCCAAGACAAGGAGCTGGTTCTCCCCTTCACCACCCTGTTCCCCGGGGCGGAGTACATCGCCCGGGCAGGATGGACGAGTGACGGCAAATATGGTTGGGCCGTGCTGCTGGACCGCAGTCAGAAGAGGCTCCAGCTGGTCCTGCTTCCCCCGGCCCTCTTCATCCCCATCACAGACGACCCGGCCCAGAGACAGGAGAGCCTGGAGGCCGTGCCCGAGGACGTCCACCCTTACATTGTCTACGAGGAGACCACCGACATCTGGATCAATGTTCATGATATTTTCTATCCGTTCGTTCAAACGTCCGAGGACGACTTCTCCTTCATATGGGTGAATGAATCCAAAACGAGCTTCAGCCATCTGTACAAAATCACGTCAACTTTGCGACCAGGCTGCTACCAATGGTCAGGAAACTACACACATACAGAGGGAGACTTTAAATGTGCAATCAAGGAGGAGGTGACTCTGACCAGTGGAGAGTGGGAGGTGTTGGCCAGGCATGGCTCCAAGATCTGGGTGAATGAGGCCTCTAAGCTGGTGTACTTCCAGGGCACTAGAGACACTCCCCTGGAGCACCACCTCTATGTGGTCAGCTATCAGTCCCCTGGCGACGTGGTCAGACTCACCAAGCCTGGCTTCTCCCACAGCTGCTCCATAAGTAAGAACTTTGACATGTTTGTCAGCCACTACAGTAACGTAAGCACTCCCCCCTGTGTCCACGTCTACAAGCTGACCGCCTCAGAGGGAGACCCTCTCCACATGGTGCCTGAGTTCTGGGCCAGCATGATGGAAGCCCCAGGTTGCCCAGGAGACTACAAATCTCCGGAGATCTTTGACTTCCCAGGAAAGTCGGGCTTCCAGCTCTACGGAATGGTGTACAAGCCTCACAACCTCCAGCCTGGCAAGAAGCATCCCACAGTCCTCTTTGTCTATGGTGGCCCGCAGGTCCAATTGGTGAATAACTCATTCAAGGGGATGAAATACCTGCGCCTCAACACCCTGGCCTCCCTGGGATACGCCGTGGTGGTCATCGACGGGAGGGGCTCCTGTCAGAGGGGCCTGGAGTTTGAAGGGGCTCTGAAAAACAAAATGGGCCAGGTGGAGATCGAGGACCAGGTGGAGGGGCTGCAGTACGTGTCGGAGAGGTTCAACTTTGTGGACCTGAGCCGCGTGGCCATCCACGGCTGGTCCTACGGCGGCTTCCTCTCCCTCATGGGCCTCATCCAGAGGCCCAACGTCTTCAAGGTGGCCATAGCGGGTGCCCCGGTGACCGTGTGGATGGCGTACGACACGGGCTACACGGAGCGCTACATGGATACTCCTGAGAACAACCCGCAGGGCTACGAGGAGGGCTCTGTGGCTCTGCACGTGGACAAACTGCCCAGCGAGCCAAACCGCTTGCTGATTCTACACGGATTCCTCGACGAGAATGTGCACTTTTTCCACACCAACTTCCTGGTGTCACAAATAATCCGCGCTGGGAAGCCATATCAGCTACAGGTCTACCCCAACGAGCGACACAGTATTCGCTGCCCAGAGTCAGGAGAACACTATGAGATCATGCTGCTGCACTTTCTACAACAATACCTCTGAAAACggggtgaacccccccccccccccccgataacCCCTCAACCTTGGCATAGAGACCTCGCACTCTGCAGCCACACCCATCCACCCCACATTTACCGTGAACTGGAGATCTCACTCCATTAtgcctccacctctctccctctctctttctctgttgctagctctctccttctctctttctctgttgcctgctctctctctctctcccattctccctttctctcgcccCTACATTAGGGTGGGGGATATGGTTAGGTTACCTAAGGTGATCCAAGGCAGTGTTATCAAGTTTCACTGTGGAATGAAAGGAGGACAACATTATCTGGAGGCTGAGCCGCAATCACTCTCCCTTGTTTTCCTCTTCACTGGAGCCATGATTGTTTTGCCAAATGTTTTTCTTTTTCCTACATTTTATTCACTCGAGTCAGTAGTAGGAGTGGGGTTCCTCAAACAGGAAATCTAGACAGGAatctagacaggcagacagaaagaaTATAGCTATAATACTTACTGTGAGTTTAAGCCTTGGAGGTGGTGTGTAATGGCTAGAGGAAGAGACCCTGCCTCTACTTGCATTCATTAACTATTTTAAGTGTGTATTGTTCAAATAAAATATTTGTATGGATTCTTATTATTTTATAATGAGCGTCAAACGAAGTCCCTCATTGATATAAAGTCATTTTTGCGCCCTTTCTCTAATCCCGCCTCGCATTACATTGCTCAAGGTGTCGGCTTGCCCTCTGAAGATACAATATTTGCCAAAGTACTTCTGACTTCTGATCATGctgttattttcttttttttactgcaATAACGATGCAAGTGTGAGCAGCCGAGTCTTAAACAGCTTTTTACCACCCGAATCAAATTTATACATGACGATGAATAAATGTATAATGAAATCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU821055 lncRNA downstream 590 53965176 ~ 53965407 (-) True G722699
TU821045 lncRNA downstream 11568 53954197 ~ 53954429 (-) True G722696
TU821043 lncRNA downstream 13597 53952195 ~ 53952400 (-) True G722694
TU821035 lncRNA downstream 21051 53944594 ~ 53944946 (-) True G722686
TU821007 lncRNA downstream 60535 53905148 ~ 53905462 (-) True G722659
TU821086 lncRNA upstream 37987 54033291 ~ 54034722 (-) True G722728
TU821166 lncRNA upstream 185138 54180442 ~ 54185532 (-) True G722805
TU821173 lncRNA upstream 192765 54188069 ~ 54189214 (-) True G722812
TU821176 lncRNA upstream 194088 54189392 ~ 54243058 (-) True G722814
TU821132 lncRNA upstream 209384 54204688 ~ 54207815 (-) True G722773
XM_021614230.2 mRNA downstream 48380 53914820 ~ 53917617 (-) True insl3
XM_036985677.1 mRNA downstream 85212 53825024 ~ 53880785 (-) False LOC110530934
XM_036985676.1 mRNA downstream 85214 53825024 ~ 53880783 (-) False LOC110530934
XM_036985672.1 mRNA downstream 85216 53818706 ~ 53880781 (-) False LOC110530934
XM_036985675.1 mRNA downstream 85218 53818706 ~ 53880779 (-) False LOC110530934
XM_021612952.2 mRNA upstream 5825 54001129 ~ 54003188 (-) True LOC110530123
XR_005053060.1 mRNA upstream 7130 54002434 ~ 54002567 (-) True LOC118965682
XM_036985681.1 mRNA upstream 13130 54008434 ~ 54014434 (-) True cnn2
XM_021612954.2 mRNA upstream 29432 54024736 ~ 54039571 (-) False crsp7
XM_021612953.2 mRNA upstream 29432 54024736 ~ 54039572 (-) True crsp7
TU821019 other downstream 38038 53926228 ~ 53927959 (-) True G722670
TU820950 other downstream 109932 53803443 ~ 53856065 (-) True G722602
TU820769 other downstream 466267 53498148 ~ 53499730 (-) True G722459
TU820029 other downstream 502233 53463182 ~ 53463764 (-) False LOC110529122
TU819491 other downstream 1204546 52761039 ~ 52761451 (-) True G721275
TU821119 other upstream 129075 54124379 ~ 54139341 (-) True G722761
TU821220 other upstream 255810 54251114 ~ 54251546 (-) True G722854
TU821231 other upstream 286381 54281685 ~ 54281978 (-) True G722864
TU822417 other upstream 1381977 55377281 ~ 55377776 (-) True G723955
TU822429 other upstream 1401320 55396624 ~ 55396885 (-) True G723966

Expression Profile