RNA id: XM_021612981.2


Basic Information

Item Value
RNA id XM_021612981.2
length 607
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110530139
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 54443130 ~ 54445222 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCCAATTTGCAATCCTTTCATGTCTGGTGGTCAAGGCGCCAAGAATCCTCCAGACCAGTAGATGGCGATAACTGTGCATGATATGTTAGAAGGAAGAACACGTTCAAGTTCCTGATGTTCTGTTCTCCTGAAGTCAGCAGTGGTGTTTGACGCCATCAAATATGCAGATCTTTGTGAAAACCTTGACGGGTAAAACCATCACCCTTGAGGTGGAACCCAGTGATACTATCGAGAATGTGAAGGCCAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAACAGCGACTCATCTTCGCTGGTAAACAGTTGGAGGATGGCCGCACGTTGTCAGACTACAACATTCAGAAAGAGTCCACTCTTCATCTCGTCCTGCGTCTGAGAGGAGGTATCATCGAGCCTTCCCTGAGACAGCTGGCGCAGAAATACAACTGTGACAAAATGATCTGCCGCAAATGCTACGCACGTCTTCACCCCCGTGCAGTCAACTGCCGCAAAAAAAAGTGTGGGCACACCAGCAACCTGCGCCCCAAGAAGAAGCTGAAGTAAACTAGCATTCTCTTTTGTCAATGTTTTCAATAATAATAAAATTGAATTGGAAAAGGG

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02927 RP-L40e, RPL40, UBA52; ubiquitin-large subunit ribosomal protein L40e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU821332 lncRNA downstream 37217 54404615 ~ 54405913 (-) True G722949
TU821281 lncRNA downstream 111355 54330765 ~ 54331775 (-) True G722906
TU821229 lncRNA downstream 166091 54276769 ~ 54277039 (-) True G722862
TU821230 lncRNA downstream 170075 54272776 ~ 54273055 (-) True G722863
TU821227 lncRNA downstream 179271 54263739 ~ 54263859 (-) True G722860
TU821364 lncRNA upstream 23683 54468905 ~ 54469431 (-) True G722978
TU821376 lncRNA upstream 64941 54510163 ~ 54510508 (-) True G722990
TU821379 lncRNA upstream 68123 54513345 ~ 54514044 (-) True G722993
TU821383 lncRNA upstream 72596 54517818 ~ 54518410 (-) True G722997
TU821405 lncRNA upstream 112238 54557460 ~ 54557689 (-) True G723017
XM_021612975.2 mRNA downstream 65556 54374233 ~ 54377574 (-) True LOC110530134
XM_021612960.2 mRNA downstream 311391 54127068 ~ 54131739 (-) True LOC110530126
XM_021612959.2 mRNA downstream 337720 54058122 ~ 54105410 (-) True LOC110530125
XM_021612953.2 mRNA downstream 403558 54024736 ~ 54039572 (-) True crsp7
XM_021612954.2 mRNA downstream 403559 54024736 ~ 54039571 (-) False crsp7
XM_021612982.2 mRNA upstream 997 54446219 ~ 54465716 (-) True LOC110530140
XM_036985695.1 mRNA upstream 32703 54477925 ~ 54485433 (-) False LOC110530141
XM_021612983.2 mRNA upstream 32703 54477925 ~ 54485771 (-) False LOC110530141
XM_021612984.2 mRNA upstream 32703 54477925 ~ 54485773 (-) True LOC110530141
XM_036985696.1 mRNA upstream 53141 54498363 ~ 54505427 (-) False LOC110530142
TU821231 other downstream 161152 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 191584 54251114 ~ 54251546 (-) True G722854
TU821119 other downstream 303789 54124379 ~ 54139341 (-) True G722761
TU821019 other downstream 515171 53926228 ~ 53927959 (-) True G722670
TU820950 other downstream 587065 53803443 ~ 53856065 (-) True G722602
TU822417 other upstream 932059 55377281 ~ 55377776 (-) True G723955
TU822429 other upstream 951402 55396624 ~ 55396885 (-) True G723966
TU822777 other upstream 1190316 55635538 ~ 55646014 (-) True G724287
TU822909 other upstream 1340295 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 1674981 56120203 ~ 56128288 (-) False G724943

Expression Profile