RNA id: XM_021612982.2


Basic Information

Item Value
RNA id XM_021612982.2
length 2767
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC110530140
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 54446219 ~ 54465716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACCATGACCGTTTTTTCTTCTGGTCTTCGTTCCTCAGTGGAGCTTAAAAACTTTCGCACACTGAACACACCCCTTTTGCTAAATCGCAAACGCTGTTTTGGCATCAGTGGAATCAAAGGGCACAGCGCAGTTGGATCTTCAATTGATCCCCGACGGAGTTTTacaaagaaaagagagagggaaaactcGCTGCTGGATGGATTAATTGCTGATTCGTCTTTTTATTTGGCAACGTATCCTCAATTACTCCAGCCAAGCTCCGACAGCATGGACCTCCTGCCAGATCTGTGGAGGCATGAGTACTGGCTGCCTCCTGGGATCACCTGGAGAGACATGGAGCAGATGCAGGAGTGTCCGCGACCCCGTGACCTGCTGTTCGCCTTGCCTCTGGCTCTGGGGTTCATTGTCCTCCGTCTAGTATTTGACAGGGTTGTGGCTCCCCCTTTGGGCAGATGTGTGGGGCTGAGGAACCGATTACGCATGGCTGTCGCTCCCGCCACAAAGCTCGAGTCATTCTACACCCAACAAAACCGACAACCATCTCAGAGTGATATCATCAGTCTAATGGCACAATGTGATAAAACCCAGAGACAAATTGAGACCTGGTTCCGTCACCGCAGAAACCACGACAGGCCCAGCTACACCAAGAGGTTCTGCGAGGCTTGTTGGAGATTTTTCTTCTACCTCATAGCGTTCCTAGCTGGACTCGCAACTTTGATCAATAAATCCTGGTTCTGGGACCAGAGAGAATGCTGGACAGGATATCCACAACAACCAATTGAGAGGGCCCACTTTTGGTACTACCAGCTGGAGCTGGGCTTCTACCTCTCCCtgcttctctgtgtctctgtggacGTCAAGAGGAAAGATTTCAAGGAGCAGGTGATTCACCACATTGCCACCATCTTCCTGCTTGGTTTCTCCTACTGTTCCAACTACGTACGGATAGGTACTCTGGTGATGCTGCTTCACGACTCCTCTGACTTCCTCCTAGAGTCTGCAAAGATGTTCAACTATGGCACGGGCTGGAGGAAGACGTGCGACACGTTGTTTGTCATTTTTGCTGCGGTTTTCCTGGTGACACGCCTGGTGGTGTTTCCCAGCAAAATAATCCACACAACTCTTGTGTTGTCCATGGAAGTCTTTGAACCCTTTGCTGGCTACTACTTTTTCAACCTTCTTCTGATGGTGCTACAAGCACTTCATGTCTTCTGGGCTGTGTTAATCCTACGGATGGCCAACAAGTTTCTATTCTTGGGCAAACTGGATAAGGATGAACGCAGCGATGAAGAGAGTGAGCTGGAAGAAGAGGACGACGACGACGacaagggagagggggaggagaaagacgAAGAGGGGGAGTGTTGTTGGGAGAGAAGTAAAGATGCCCTGAACGCCAAACTGAAAATGCTGAACAAAAGCTTTGTCTTAAACAACCTGACCAATCACAGAGCTGCTATTGTGAGCAAGATGCGCAAAGCGAGGTAGAATTATGAACCTAGACAgagtgattgttttctgtcaacAATTAAGTTACATTATAGACCAGTTCGAATGGAGTACTTTTTCTCCATCTGGCCACTATTCCTCTCCGCATAGTCTACTTGATAGCAATTGGTCTGCCTATTTCAGTCTTTTCAAGACTGGAAAACTCTGTATGAAAGTGTATGAAAGAGATTGCTTTCATATTTTGACTACAGATTATTTGTTGAATTAAGAGATTCATGCTTCAGTATACTGAATGTTTGTCACAAAACGGTTTGATATCTCTAGGAATTGTTTTGAGTGCAGTTTTtgtaaatgtaattgttttgtAATTCAACATGTCGTTTTTCAACTATATAATTGTATTTCATGGTCAAGATTTATAATAGTGGGCTTATCGTGATGCTCCAGagcttttgtataatttcagccagtaatTTAGAAAGTAGTGCTCGAGAGTCCCCTAAAATGGTGCACAAtagtgtactacgtcatccaattcgtacaatatgttatgaatttgtaaGTGATACATCTCTTCTCTTAACACGTATGGACCCAGAATCCAGCATCTGACCAATTACAcaagactttagttctgggttaaccaagGTTAGAGTAGGCTACACTGTTGTAAATGATAGAGCTATATAACATCTGTAATGCAATTGCAGAAAAACGGATTTGACTAGTTTTGCATGGATCAACAAAATACACTTAAAAAATTATAGTATAGTGTGCTAGCCTAGCTGGCCTAGATTACACATGTCCTAAAATGTATATCCGAGTGTGACTGGTGTTCTTTTCGTTTGACCAATGTATGAAGTTTTTACCAAGACATTGGTAAAAAGTATGATTTTGGAACAATACATGATTTAATTCACTGAAGTCCTGCTATGCTAACACTGAGTTTTCAATATTTAATGATCTTTTGCATTGAATTTACTCAATTTACCTTTGGGCAGAGGGGTGCAGGTCATTGTGTCATAGCAAATGCCGCCTAATAGCATCCTTTAAATGGTGAATAAACCATCATTTTGGAATGTATAGGCCAAACTTCAGTGACTTTGGTAATTTAGTTGAAACTTTTAATCATGTGAAATGCAATGTATCAATTGTTGCATGACAATAAGTGCGTGTTGAGGCCTACCTGTttttaaaacctctacaggatcgggtGGTTCccccgcgggacggttgagctaacgtaggcttatgtgattagcatgaggttgtaacaagaacatttcccaggacatagacatatctgatattggcag

Function

GO: NA

KEGG:

id description
K23727 CERS5_6, LASS5_6; sphingoid base N-palmitoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU821332 lncRNA downstream 40306 54404615 ~ 54405913 (-) True G722949
TU821281 lncRNA downstream 114444 54330765 ~ 54331775 (-) True G722906
TU821229 lncRNA downstream 169180 54276769 ~ 54277039 (-) True G722862
TU821230 lncRNA downstream 173164 54272776 ~ 54273055 (-) True G722863
TU821227 lncRNA downstream 182360 54263739 ~ 54263859 (-) True G722860
TU821364 lncRNA upstream 3189 54468905 ~ 54469431 (-) True G722978
TU821376 lncRNA upstream 44447 54510163 ~ 54510508 (-) True G722990
TU821379 lncRNA upstream 47629 54513345 ~ 54514044 (-) True G722993
TU821383 lncRNA upstream 52102 54517818 ~ 54518410 (-) True G722997
TU821405 lncRNA upstream 91744 54557460 ~ 54557689 (-) True G723017
XM_021612981.2 mRNA downstream 997 54443130 ~ 54445222 (-) True LOC110530139
XM_021612975.2 mRNA downstream 68645 54374233 ~ 54377574 (-) True LOC110530134
XM_021612960.2 mRNA downstream 314480 54127068 ~ 54131739 (-) True LOC110530126
XM_021612959.2 mRNA downstream 340809 54058122 ~ 54105410 (-) True LOC110530125
XM_021612953.2 mRNA downstream 406647 54024736 ~ 54039572 (-) True crsp7
XM_036985695.1 mRNA upstream 12209 54477925 ~ 54485433 (-) False LOC110530141
XM_021612983.2 mRNA upstream 12209 54477925 ~ 54485771 (-) False LOC110530141
XM_021612984.2 mRNA upstream 12209 54477925 ~ 54485773 (-) True LOC110530141
XM_036985696.1 mRNA upstream 32647 54498363 ~ 54505427 (-) False LOC110530142
XM_021612986.2 mRNA upstream 32647 54498363 ~ 54507484 (-) False LOC110530142
TU821231 other downstream 164241 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 194673 54251114 ~ 54251546 (-) True G722854
TU821119 other downstream 306878 54124379 ~ 54139341 (-) True G722761
TU821019 other downstream 518260 53926228 ~ 53927959 (-) True G722670
TU820950 other downstream 590154 53803443 ~ 53856065 (-) True G722602
TU822417 other upstream 911565 55377281 ~ 55377776 (-) True G723955
TU822429 other upstream 930908 55396624 ~ 55396885 (-) True G723966
TU822777 other upstream 1169822 55635538 ~ 55646014 (-) True G724287
TU822909 other upstream 1319801 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 1654487 56120203 ~ 56128288 (-) False G724943

Expression Profile